GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001520-TA|BGIBMGA001520-PA|undefined
         (86 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces ...    27   0.37 
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    24   2.6  
SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomy...    24   3.4  
SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces...    23   4.6  
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||...    23   4.6  
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom...    23   4.6  
SPBC577.03c |||GCN5-related N-acetyltransferase |Schizosaccharom...    23   6.0  

>SPBC25D12.02c |dnt1||nucleolar protein Dnt1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 599

 Score = 27.1 bits (57), Expect = 0.37
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)

Query: 53  TEIRDRAYGNSSKASNYDSGLKEGIKI 79
           T IRDRAY  SS   N +S L EGI +
Sbjct: 164 TSIRDRAYSISSNHDN-ESTLTEGIAL 189


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 24.2 bits (50), Expect = 2.6
 Identities = 8/25 (32%), Positives = 16/25 (64%)

Query: 17  MNLVKDIWLFGNHKIVKYSKDTTVD 41
           M  +K+  L G H +++Y+ + T+D
Sbjct: 778 MRALKNTHLLGRHLVLQYASNATMD 802


>SPAC6B12.04c |||aminotransferase class I and II|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 421

 Score = 23.8 bits (49), Expect = 3.4
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 7/65 (10%)

Query: 24  WLFGNHKIVKYSKDT-TVDCGKFVCLRSQFTEIRDRAYGNSSKASNYD---SGLKEGIKI 79
           WL G+  ++KYS    T  C     + S   E    A+G + K + Y+   S  K+  +I
Sbjct: 260 WLIGDESLIKYSAAAHTRIC---FAVNSPCQEALAIAFGEAEKHNYYEEYKSSYKKRFEI 316

Query: 80  FTQAY 84
             +A+
Sbjct: 317 LAKAF 321


>SPBC23G7.04c |nif1||SEL1 repear protein Nif1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 681

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 51  QFTEIRDRAYGNSSKASNYDS 71
           Q+T +R  AYGN + + + D+
Sbjct: 420 QYTNLRGGAYGNGNNSESSDN 440


>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1116

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 12/40 (30%), Positives = 21/40 (52%), Gaps = 1/40 (2%)

Query: 25  LFGNHKIVKYSKDTTVDCGKFVCLRSQFTEIRDRAYGNSS 64
           L+G+ +IV+   DTT+  G  V   + F  ++    GN +
Sbjct: 797 LWGS-RIVELKPDTTITSGSVVSQNATFKWMKGELIGNGT 835


>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
           Eng2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 706

 Score = 23.4 bits (48), Expect = 4.6
 Identities = 15/55 (27%), Positives = 26/55 (47%), Gaps = 1/55 (1%)

Query: 28  NHKIVKYSK-DTTVDCGKFVCLRSQFTEIRDRAYGNSSKASNYDSGLKEGIKIFT 81
           N  +V  S  D+    GK V + +Q   +  R  G+S+  +   + LK+ +  FT
Sbjct: 366 NFDVVNASNLDSMYTSGKIVAMYAQVCLVASRILGDSTLTNTGLTKLKQAMARFT 420


>SPBC577.03c |||GCN5-related N-acetyltransferase
          |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 23.0 bits (47), Expect = 6.0
 Identities = 8/20 (40%), Positives = 14/20 (70%)

Query: 32 VKYSKDTTVDCGKFVCLRSQ 51
          +K +++TTVDCG  + +  Q
Sbjct: 1  MKINQNTTVDCGNLILVPYQ 20


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 394,006
Number of Sequences: 5004
Number of extensions: 13223
Number of successful extensions: 28
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 22
Number of HSP's gapped (non-prelim): 8
length of query: 86
length of database: 2,362,478
effective HSP length: 61
effective length of query: 25
effective length of database: 2,057,234
effective search space: 51430850
effective search space used: 51430850
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)