GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001520-TA|BGIBMGA001520-PA|undefined
         (86 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0608 + 19184722-19185224,19185331-19185410,19186048-191862...    30   0.20 
02_03_0295 - 17383064-17383087,17383314-17383463,17383922-173840...    28   1.1  
07_01_1211 - 11546407-11546466,11546550-11546618,11546777-115468...    25   7.5  
02_02_0351 + 9257204-9261388                                           25   7.5  
01_02_0118 + 11271020-11271293,11272849-11273145,11273226-112734...    25   7.5  
07_03_1166 - 24461881-24462013,24462255-24462643,24462877-244629...    25   10.0 
07_01_0549 + 4082672-4082731,4083424-4083489,4083628-4083674,408...    25   10.0 

>10_08_0608 +
           19184722-19185224,19185331-19185410,19186048-19186235,
           19187021-19187927,19188015-19188142,19189270-19189356,
           19189422-19189472,19189582-19189668,19189746-19189873,
           19190469-19190608,19190721-19190882,19190964-19192733,
           19192807-19192922,19193077-19193227,19193243-19193371,
           19193598-19194139
          Length = 1722

 Score = 30.3 bits (65), Expect = 0.20
 Identities = 10/35 (28%), Positives = 22/35 (62%)

Query: 18  NLVKDIWLFGNHKIVKYSKDTTVDCGKFVCLRSQF 52
           NL+KD+  +G+H+++  + ++   C   +C+R  F
Sbjct: 676 NLIKDLHAYGHHRLIYEAFNSYHHCEIIICMRIHF 710


>02_03_0295 -
           17383064-17383087,17383314-17383463,17383922-17384038,
           17385506-17385592,17386269-17386408,17387708-17387839,
           17387927-17387936,17388949-17388999,17389038-17389083,
           17389570-17389690,17389775-17389913
          Length = 338

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)

Query: 27  GNHKIVKYSKDTTVDCGKFVCLRSQFTEIRDRAYGNSSK 65
           G H++VK   D   DC K V   + +T +    YG+S K
Sbjct: 199 GQHRVVKILLDHNADCNKIV--SAVYTPLLVAIYGSSLK 235


>07_01_1211 -
           11546407-11546466,11546550-11546618,11546777-11546865,
           11547046-11547142,11547238-11547391,11548295-11548409,
           11549182-11549250,11549996-11550110
          Length = 255

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 27  GNHKIVKYSKDTTVDCGKFVCLRSQ 51
           G  K+ K  + + + CG FVC RS+
Sbjct: 101 GEGKLEKQFRMSCLGCGLFVCYRSE 125


>02_02_0351 + 9257204-9261388
          Length = 1394

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 8   PSLTCDNICMNLVKDIWLFG 27
           PS  C NIC+N +K + + G
Sbjct: 831 PSWLCGNICVNYLKSLHIEG 850


>01_02_0118 +
           11271020-11271293,11272849-11273145,11273226-11273439,
           11273563-11273672,11273746-11273945,11274439-11274501,
           11274560-11274663,11274868-11275055,11275129-11275328,
           11275463-11275693
          Length = 626

 Score = 25.0 bits (52), Expect = 7.5
 Identities = 14/53 (26%), Positives = 24/53 (45%)

Query: 16  CMNLVKDIWLFGNHKIVKYSKDTTVDCGKFVCLRSQFTEIRDRAYGNSSKASN 68
           C  +V    +FGN+ I++  K+ +V     VC      E  + A  N++   N
Sbjct: 288 CQGIVVASAIFGNYDIMQQPKNISVFSKDTVCFFMFLDEETEAAIKNTTTIDN 340


>07_03_1166 -
           24461881-24462013,24462255-24462643,24462877-24462948,
           24463718-24463887,24464232-24464362,24464744-24464860,
           24464969-24465351,24465582-24465764
          Length = 525

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 14/47 (29%), Positives = 22/47 (46%)

Query: 33  KYSKDTTVDCGKFVCLRSQFTEIRDRAYGNSSKASNYDSGLKEGIKI 79
           KY  + T+DC       S  + +RD      S  + YD+ L+ G +I
Sbjct: 212 KYGVEETLDCSVECAKSSSRSVLRDMDLKLVSFRATYDTHLRAGKEI 258


>07_01_0549 +
          4082672-4082731,4083424-4083489,4083628-4083674,
          4083757-4083802,4083905-4083985,4084105-4084147,
          4084258-4084307,4084392-4084473,4084538-4084587,
          4084687-4084760,4084870-4084921,4085034-4085459,
          4085816-4086403
          Length = 554

 Score = 24.6 bits (51), Expect = 10.0
 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 28 NHKIVKYSKDTTVDCGKFVCLRSQFTEIRDRAYGNSSKASNYDS 71
          N  IV+Y KD+ V+ G +VC+   + E  D +       SNY S
Sbjct: 29 NPYIVEY-KDSWVEKGCYVCIVIGYCEGGDMSEAIKKANSNYFS 71


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,301,464
Number of Sequences: 37544
Number of extensions: 74046
Number of successful extensions: 119
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 113
Number of HSP's gapped (non-prelim): 7
length of query: 86
length of database: 14,793,348
effective HSP length: 65
effective length of query: 21
effective length of database: 12,352,988
effective search space: 259412748
effective search space used: 259412748
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)