GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001520-TA|BGIBMGA001520-PA|undefined
         (86 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27411| Best HMM Match : RVT_1 (HMM E-Value=0.002)                   25   6.6  
SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)                25   6.6  
SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   8.7  

>SB_27411| Best HMM Match : RVT_1 (HMM E-Value=0.002)
          Length = 698

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 42  CGKFVCLRSQFTEIRDRAYGNSSKASNYDSGLKEGI 77
           C KF  +    T I+DR  G+++ + N D   K+ I
Sbjct: 141 CEKFKLITMVNTVIKDRTMGDNNYSDNNDHTFKDEI 176


>SB_22840| Best HMM Match : F5_F8_type_C (HMM E-Value=0)
          Length = 4002

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/27 (40%), Positives = 12/27 (44%)

Query: 47   CLRSQFTEIRDRAYGNSSKASNYDSGL 73
            C       IR R YG S K  NY  G+
Sbjct: 1761 CFSGGKAHIRYRKYGRSRKCRNYKGGI 1787


>SB_25740| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 678

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 2/73 (2%)

Query: 3   ETTAQPSLTCDNICMNLVKDI-WLFGNHKIVKYSKDTTVDCGKFVCLRSQFTEIRDRA-Y 60
           E T + S+  DN  +  + D  +L+  H + + S++    C +         E+   A Y
Sbjct: 179 EATKERSIYKDNGRLLAITDARYLYVTHLLFELSEERLTGCQEQDGKTKVPDEVCFPAPY 238

Query: 61  GNSSKASNYDSGL 73
           G++S  S+YD GL
Sbjct: 239 GSASPTSDYDVGL 251


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,866,418
Number of Sequences: 59808
Number of extensions: 97336
Number of successful extensions: 173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 16,821,457
effective HSP length: 63
effective length of query: 23
effective length of database: 13,053,553
effective search space: 300231719
effective search space used: 300231719
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)