GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001520-TA|BGIBMGA001520-PA|undefined
         (86 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical ...    28   0.93 
AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical ...    26   2.8  
Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical pr...    26   3.8  
Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical pr...    26   3.8  
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    26   3.8  
Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical pr...    25   6.6  
Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical pr...    25   8.7  
AC199169-9|ABO33255.1|  435|Caenorhabditis elegans Hypothetical ...    25   8.7  

>AC091267-2|AAK31564.2| 1133|Caenorhabditis elegans Hypothetical
            protein Y37B11A.2 protein.
          Length = 1133

 Score = 27.9 bits (59), Expect = 0.93
 Identities = 11/27 (40%), Positives = 14/27 (51%)

Query: 33   KYSKDTTVDCGKFVCLRSQFTEIRDRA 59
            +  +D  VDC  F CL  Q   I DR+
Sbjct: 1095 RLGEDQVVDCANFTCLLRQTMSIMDRS 1121


>AL117204-3|CAB55147.2|  675|Caenorhabditis elegans Hypothetical
           protein Y116A8C.5 protein.
          Length = 675

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 10/27 (37%), Positives = 15/27 (55%)

Query: 47  CLRSQFTEIRDRAYGNSSKASNYDSGL 73
           CL  Q+TE  D  YG  +K+  Y+  +
Sbjct: 545 CLEDQYTEYDDPEYGRIAKSCIYNGSM 571


>Z83104-7|CAH60780.1|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 48  LRSQFTEIRDRAYGNSSKASNYDSGLKEGIK 78
           LRSQ+T IR RA   +  A ++      G+K
Sbjct: 683 LRSQWTTIRSRASSRTRSAHSHRENADAGVK 713


>Z70685-2|CAA94606.2|  762|Caenorhabditis elegans Hypothetical
           protein R07D5.2 protein.
          Length = 762

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 48  LRSQFTEIRDRAYGNSSKASNYDSGLKEGIK 78
           LRSQ+T IR RA   +  A ++      G+K
Sbjct: 683 LRSQWTTIRSRASSRTRSAHSHRENADAGVK 713


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 44  KFVCLRSQFTEIRDRAYGNSSKASNYDSGLKEGIK 78
           ++VC+ ++ +    R +  SS+AS   SG++EG +
Sbjct: 957 QYVCIHTKKSLESLRLFSTSSRASGVVSGIQEGTR 991


>Z83316-4|CAB54187.3| 1050|Caenorhabditis elegans Hypothetical
          protein B0379.3b protein.
          Length = 1050

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 53 TEIRDRAYGNSSKASNYDSGLKEG 76
          TE    +YGNSS   +YDS L  G
Sbjct: 46 TEDDTNSYGNSSGEHDYDSYLDSG 69


>Z83316-3|CAB05895.3| 1054|Caenorhabditis elegans Hypothetical
          protein B0379.3a protein.
          Length = 1054

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 12/24 (50%), Positives = 14/24 (58%)

Query: 53 TEIRDRAYGNSSKASNYDSGLKEG 76
          TE    +YGNSS   +YDS L  G
Sbjct: 46 TEDDTNSYGNSSGEHDYDSYLDSG 69


>Z73102-7|CAA97420.1|  727|Caenorhabditis elegans Hypothetical
           protein B0035.6 protein.
          Length = 727

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 15/51 (29%), Positives = 20/51 (39%), Gaps = 1/51 (1%)

Query: 19  LVKDIWLFGNHKIVKYSKDTTVDCGKFVCLRSQFTEIRDRAYGNSSKASNY 69
           L +D+W   N K +++       C       S        AYGNSS  S Y
Sbjct: 676 LHRDLWA-ENEKNMEHWTRPASPCNSSFFAESSVKPTTSSAYGNSSNFSRY 725


>AC199169-9|ABO33255.1|  435|Caenorhabditis elegans Hypothetical
          protein F38A1.4 protein.
          Length = 435

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 15 ICMNLVKDIWLFGNHKIVKYSKDTTVD--CGKFVCLRSQFTEIRDRAYGNSSKASNY 69
          +C+  +  ++LF   K+   + D  +   C KFV  +  FT+ R+  +  +   S+Y
Sbjct: 17 MCLLFILLVFLFYTDKVCFDNDDKEIKGLCYKFVSQQMTFTDARNWCHYQNPVTSSY 73


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,115,751
Number of Sequences: 27539
Number of extensions: 72563
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 128
Number of HSP's gapped (non-prelim): 9
length of query: 86
length of database: 12,573,161
effective HSP length: 65
effective length of query: 21
effective length of database: 10,783,126
effective search space: 226445646
effective search space used: 226445646
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)