GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001520-TA|BGIBMGA001520-PA|undefined
         (86 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    20   3.8  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    19   6.6  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    19   6.6  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    19   6.6  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    19   6.6  

>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.2 bits (40), Expect = 3.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)

Query: 58  RAYGNSSKASNYDS 71
           R Y   SK S+YDS
Sbjct: 356 RRYNTPSKRSDYDS 369


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 43  GKFVCLRSQFTEIRDRAY 60
           G + CL+      RDRA+
Sbjct: 285 GNYSCLKVDLIFTRDRAF 302


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 43  GKFVCLRSQFTEIRDRAY 60
           G + CL+      RDRA+
Sbjct: 254 GNYSCLKVDLIFTRDRAF 271


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 43  GKFVCLRSQFTEIRDRAY 60
           G + CL+      RDRA+
Sbjct: 305 GNYSCLKVDLIFTRDRAF 322


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 19.4 bits (38), Expect = 6.6
 Identities = 7/18 (38%), Positives = 10/18 (55%)

Query: 43  GKFVCLRSQFTEIRDRAY 60
           G + CL+      RDRA+
Sbjct: 254 GNYSCLKVDLIFTRDRAF 271


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,538
Number of Sequences: 429
Number of extensions: 1056
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 140,377
effective HSP length: 48
effective length of query: 38
effective length of database: 119,785
effective search space:  4551830
effective search space used:  4551830
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (20.0 bits)
S2: 37 (19.0 bits)