GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001520-TA|BGIBMGA001520-PA|undefined
         (86 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48800.1 68416.m05329 sterile alpha motif (SAM) domain-contai...    30   0.17 
At4g06526.1 68417.m00938 hypothetical protein                          25   6.2  
At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putati...    25   8.2  
At2g33210.1 68415.m04069 chaperonin, putative similar to SWISS-P...    25   8.2  
At1g71850.1 68414.m08303 expressed protein ; expression supporte...    25   8.2  

>At3g48800.1 68416.m05329 sterile alpha motif (SAM)
           domain-containing protein contains Pfam profile PF00536:
           SAM domain (Sterile alpha motif)
          Length = 278

 Score = 30.3 bits (65), Expect = 0.17
 Identities = 14/26 (53%), Positives = 16/26 (61%)

Query: 61  GNSSKASNYDSGLKEGIKIFTQAYGL 86
           GN    SN D G KEG+KI+ Q  GL
Sbjct: 202 GNREFESNMDGGGKEGVKIWLQELGL 227


>At4g06526.1 68417.m00938 hypothetical protein
          Length = 506

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 9/32 (28%), Positives = 15/32 (46%)

Query: 16  CMNLVKDIWLFGNHKIVKYSKDTTVDCGKFVC 47
           C   +   WL+    +V+   +T V CG  +C
Sbjct: 455 CRQALLSGWLYEKFHLVEVGPETPVACGHDIC 486


>At5g03520.1 68418.m00308 Ras-related GTP-binding protein, putative
           similar to GTP-binding protein GI:871508 from [Pisum
           sativum]
          Length = 216

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 9/21 (42%), Positives = 16/21 (76%)

Query: 3   ETTAQPSLTCDNICMNLVKDI 23
           ET+A+ +L  +N+ M++ KDI
Sbjct: 157 ETSAKTNLNVENVFMSIAKDI 177


>At2g33210.1 68415.m04069 chaperonin, putative similar to
           SWISS-PROT:Q05046- chaperonin CPN60-2, mitochondrial
           precursor (HSP60-2) [Cucurbita maxima]; contains
           Pfam:PF00118 domain, TCP-1/cpn60 chaperonin family
          Length = 585

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)

Query: 13  DNICMNLVK-DIWLFGNHKIVKYSKDTTV 40
           + + MNL   D+ +FGN K V  SKD TV
Sbjct: 334 EELGMNLDNIDLSMFGNCKKVTVSKDDTV 362


>At1g71850.1 68414.m08303 expressed protein ; expression supported
           by MPSS
          Length = 470

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 3/49 (6%)

Query: 33  KYSKDTTVDCGKFVCLRSQFTEIRDRAYG---NSSKASNYDSGLKEGIK 78
           K  KD  +  G+F+ LRS+F  +     G    SSK   +   L++G K
Sbjct: 290 KVEKDAILHLGEFMGLRSRFKRVLHNHPGIFYLSSKLRTHTVVLRDGYK 338


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.134    0.408 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,004
Number of Sequences: 28952
Number of extensions: 68365
Number of successful extensions: 142
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 139
Number of HSP's gapped (non-prelim): 5
length of query: 86
length of database: 12,070,560
effective HSP length: 65
effective length of query: 21
effective length of database: 10,188,680
effective search space: 213962280
effective search space used: 213962280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 51 (24.6 bits)