Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001519-TA|BGIBMGA001519-PA|undefined
         (58 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory recept...    19   3.9  
AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory recept...    19   3.9  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    19   5.2  
AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cogna...    18   6.8  
AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock prote...    18   6.8  
AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase ...    18   6.8  
AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase ...    18   6.8  
AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase ...    18   6.8  
AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase ...    18   6.8  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        18   9.0  

>AM292357-1|CAL23169.2|  355|Tribolium castaneum gustatory
          receptor candidate 36 protein.
          Length = 355

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 46 LTTWTITDAES 56
          LTTWT+  A +
Sbjct: 51 LTTWTVISAST 61


>AM292343-1|CAL23155.2|  301|Tribolium castaneum gustatory receptor
           candidate 22 protein.
          Length = 301

 Score = 19.0 bits (37), Expect = 3.9
 Identities = 9/28 (32%), Positives = 14/28 (50%)

Query: 5   CNKIAKDDALLAIIPSDINTEGRKGLFV 32
           CN+  K   LL  +  DI+ E  + + V
Sbjct: 217 CNEANKTKILLVGLKIDIDQEEERNVVV 244


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short
          gastrulation protein.
          Length = 947

 Score = 18.6 bits (36), Expect = 5.2
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 29 GLFVLAASLCIAAGRSPL 46
          GLF +  +L  A  ++PL
Sbjct: 5  GLFCVLVTLATARNKAPL 22


>AY769607-1|AAV40983.1|  196|Tribolium castaneum heat shock cognate
           70 protein.
          Length = 196

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 2   KKPCNKIAKDDA 13
           K+PC  I  D+A
Sbjct: 185 KEPCRSINPDEA 196


>AY769606-1|AAV40982.1|  196|Tribolium castaneum heat shock protein
           70 protein.
          Length = 196

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 6/12 (50%), Positives = 8/12 (66%)

Query: 2   KKPCNKIAKDDA 13
           K+PC  I  D+A
Sbjct: 185 KEPCRSINPDEA 196


>AY295880-2|AAQ62694.1| 1558|Tribolium castaneum chitin synthase
           variant 2 protein.
          Length = 1558

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 23  NTEGRKGLFVLAASLCIAAGRSPLTTWTITD 53
           N E ++ L V+     IAA  +    W I +
Sbjct: 218 NKESQRFLKVIIDLFAIAAQATGFVVWPIIE 248


>AY295880-1|AAQ62693.1| 1558|Tribolium castaneum chitin synthase
           variant 1 protein.
          Length = 1558

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 23  NTEGRKGLFVLAASLCIAAGRSPLTTWTITD 53
           N E ++ L V+     IAA  +    W I +
Sbjct: 218 NKESQRFLKVIIDLFAIAAQATGFVVWPIIE 248


>AY291476-1|AAQ55060.1| 1558|Tribolium castaneum chitin synthase
           CHS1B protein.
          Length = 1558

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 23  NTEGRKGLFVLAASLCIAAGRSPLTTWTITD 53
           N E ++ L V+     IAA  +    W I +
Sbjct: 218 NKESQRFLKVIIDLFAIAAQATGFVVWPIIE 248


>AY291475-1|AAQ55059.1| 1558|Tribolium castaneum chitin synthase
           CHS1A protein.
          Length = 1558

 Score = 18.2 bits (35), Expect = 6.8
 Identities = 9/31 (29%), Positives = 14/31 (45%)

Query: 23  NTEGRKGLFVLAASLCIAAGRSPLTTWTITD 53
           N E ++ L V+     IAA  +    W I +
Sbjct: 218 NKESQRFLKVIIDLFAIAAQATGFVVWPIIE 248


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 17.8 bits (34), Expect = 9.0
 Identities = 5/8 (62%), Positives = 7/8 (87%)

Query: 5   CNKIAKDD 12
           C K+AK+D
Sbjct: 264 CEKVAKED 271


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,359
Number of Sequences: 317
Number of extensions: 335
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of query: 58
length of database: 114,650
effective HSP length: 38
effective length of query: 20
effective length of database: 102,604
effective search space:  2052080
effective search space used:  2052080
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.5 bits)
S2: 34 (17.8 bits)