GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001519-TA|BGIBMGA001519-PA|undefined
         (58 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q3M3C2 Cluster: Major facilitator superfamily MFS_1; n=...    33   1.5  
UniRef50_A0LR35 Cluster: O-antigen polymerase; n=1; Acidothermus...    30   7.9  

>UniRef50_Q3M3C2 Cluster: Major facilitator superfamily MFS_1; n=3;
           Cyanobacteria|Rep: Major facilitator superfamily MFS_1 -
           Anabaena variabilis (strain ATCC 29413 / PCC 7937)
          Length = 419

 Score = 32.7 bits (71), Expect = 1.5
 Identities = 16/46 (34%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 16  AIIPSDINTEGRKGLFVLAASLCIAAGR---SPLTTWTITDAESVT 58
           A + SD++ E ++G++    SLC AAG    SPL  W +   +++T
Sbjct: 345 ASLVSDLSPESQRGVYFSINSLCWAAGSFIGSPLGGWALDQPQAIT 390


>UniRef50_A0LR35 Cluster: O-antigen polymerase; n=1; Acidothermus
           cellulolyticus 11B|Rep: O-antigen polymerase -
           Acidothermus cellulolyticus (strain ATCC 43068 / 11B)
          Length = 501

 Score = 30.3 bits (65), Expect = 7.9
 Identities = 12/29 (41%), Positives = 18/29 (62%)

Query: 29  GLFVLAASLCIAAGRSPLTTWTITDAESV 57
           G  ++  S+ +AAGR P  +W +TD  SV
Sbjct: 157 GTGLIDVSVAMAAGRGPFDSWLLTDERSV 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 58,425,040
Number of Sequences: 1657284
Number of extensions: 1542097
Number of successful extensions: 3217
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3216
Number of HSP's gapped (non-prelim): 2
length of query: 58
length of database: 575,637,011
effective HSP length: 38
effective length of query: 20
effective length of database: 512,660,219
effective search space: 10253204380
effective search space used: 10253204380
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)