GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001519-TA|BGIBMGA001519-PA|undefined
         (58 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr...    25   1.2  
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom...    25   1.2  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    23   3.6  
SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr...    23   6.4  
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo...    22   8.4  

>SPCC1919.10c |myo52||myosin type V|Schizosaccharomyces pombe|chr
          3|||Manual
          Length = 1516

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 8/21 (38%), Positives = 15/21 (71%)

Query: 10 KDDALLAIIPSDINTEGRKGL 30
          +++ ++ + P D+N EGR GL
Sbjct: 45 ENETVITVKPDDLNYEGRNGL 65


>SPBC32F12.02 |rec14||recombination protein
          Rec14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 302

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 12/26 (46%), Positives = 17/26 (65%)

Query: 30 LFVLAASLCIAAGRSPLTTWTITDAE 55
          L V+A +L  A+G S +  W+I DAE
Sbjct: 22 LNVVAGNLWSASGDSKIKKWSIGDAE 47


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 23.4 bits (48), Expect = 3.6
 Identities = 8/19 (42%), Positives = 15/19 (78%)

Query: 39   IAAGRSPLTTWTITDAESV 57
            IA+GR  +T+W ++DA+ +
Sbjct: 1000 IASGRFGVTSWYLSDADEL 1018


>SPAC1399.03 |fur4||uracil permease|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 581

 Score = 22.6 bits (46), Expect = 6.4
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)

Query: 14  LLAIIPSDINTEG-RKGLFVLAASLCIA 40
           LLA      N  G R G+F +A  LCIA
Sbjct: 327 LLASFLDHSNAHGVRAGVFFIAFGLCIA 354


>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1336

 Score = 22.2 bits (45), Expect = 8.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)

Query: 38  CIAAGRSPLTTWT 50
           C++A   PL TWT
Sbjct: 112 CLSAALEPLMTWT 124


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,637
Number of Sequences: 5004
Number of extensions: 5903
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 58
length of database: 2,362,478
effective HSP length: 39
effective length of query: 19
effective length of database: 2,167,322
effective search space: 41179118
effective search space used: 41179118
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)