GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001519-TA|BGIBMGA001519-PA|undefined
         (58 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0815 + 11477618-11477845,11478206-11478337,11480227-114804...    25   5.9  
02_01_0408 - 2972240-2975380                                           25   5.9  

>03_02_0815 +
           11477618-11477845,11478206-11478337,11480227-11480408,
           11480500-11480662,11481480-11481794
          Length = 339

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)

Query: 2   KKPCNKIAKDDALLAIIPSDI 22
           +KP  K  KD +LL I+PS +
Sbjct: 181 RKPMQKSGKDHSLLLILPSGV 201


>02_01_0408 - 2972240-2975380
          Length = 1046

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/37 (32%), Positives = 19/37 (51%)

Query: 17  IIPSDINTEGRKGLFVLAASLCIAAGRSPLTTWTITD 53
           +IP D   +G + L  L+   C  +GR PL    +T+
Sbjct: 439 VIPQDETIDGFENLQALSVDHCSLSGRIPLWLSKLTN 475


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,598,983
Number of Sequences: 37544
Number of extensions: 44222
Number of successful extensions: 89
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 87
Number of HSP's gapped (non-prelim): 2
length of query: 58
length of database: 14,793,348
effective HSP length: 38
effective length of query: 20
effective length of database: 13,366,676
effective search space: 267333520
effective search space used: 267333520
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 52 (25.0 bits)