GeneModel BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001519-TA|BGIBMGA001519-PA|undefined
         (58 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY422079-1|AAR38850.1|  694|Homo sapiens peptidylarginine deimin...    27   7.0  
AJ549502-6|CAD70706.1|  694|Homo sapiens peptidyl arginine deimi...    27   7.0  

>AY422079-1|AAR38850.1|  694|Homo sapiens peptidylarginine deiminase
           type 6 protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 12  DALLAIIPSDINTEGRKGLFVLAAS 36
           D  +  IP+D   EG+KG  +L AS
Sbjct: 482 DEFMCFIPTDDKNEGKKGFLLLLAS 506


>AJ549502-6|CAD70706.1|  694|Homo sapiens peptidyl arginine
           deiminase, type V protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 12  DALLAIIPSDINTEGRKGLFVLAAS 36
           D  +  IP+D   EG+KG  +L AS
Sbjct: 482 DEFMCFIPTDDKNEGKKGFLLLLAS 506


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,896,871
Number of Sequences: 224733
Number of extensions: 203351
Number of successful extensions: 251
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 249
Number of HSP's gapped (non-prelim): 2
length of query: 58
length of database: 73,234,838
effective HSP length: 38
effective length of query: 20
effective length of database: 64,694,984
effective search space: 1293899680
effective search space used: 1293899680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)