GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001519-TA|BGIBMGA001519-PA|undefined
         (58 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    19   4.7  
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        19   6.3  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        19   6.3  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        19   6.3  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    19   6.3  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              18   8.3  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    18   8.3  

>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
           AbsCAM-Ig7B protein.
          Length = 1923

 Score = 19.0 bits (37), Expect = 4.7
 Identities = 8/18 (44%), Positives = 11/18 (61%)

Query: 39  IAAGRSPLTTWTITDAES 56
           +AAG  PLT   + D +S
Sbjct: 634 VAAGDPPLTISWLKDGQS 651


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 3  KPCNKIAKDDALLAIIPSDINTEGR 27
          K C+++ KD A+  I  S I+   R
Sbjct: 44 KECDEMKKDSAVKGIPVSCISGRDR 68


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 3  KPCNKIAKDDALLAIIPSDINTEGR 27
          K C+++ KD A+  I  S I+   R
Sbjct: 44 KECDEMKKDSAVKGIPVSCISGRDR 68


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)

Query: 3  KPCNKIAKDDALLAIIPSDINTEGR 27
          K C+++ KD A+  I  S I+   R
Sbjct: 44 KECDEMKKDSAVKGIPVSCISGRDR 68


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 18.6 bits (36), Expect = 6.3
 Identities = 8/25 (32%), Positives = 13/25 (52%)

Query: 1   MKKPCNKIAKDDALLAIIPSDINTE 25
           +K    +   DDA + I+P   NT+
Sbjct: 221 LKGIARQFYNDDANVYILPDPYNTK 245


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 6/21 (28%), Positives = 12/21 (57%)

Query: 31 FVLAASLCIAAGRSPLTTWTI 51
          FV+ +++C+  G   L  + I
Sbjct: 4  FVIISAICVCVGALTLEEFQI 24


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 18.2 bits (35), Expect = 8.3
 Identities = 8/28 (28%), Positives = 14/28 (50%)

Query: 4   PCNKIAKDDALLAIIPSDINTEGRKGLF 31
           P + I   +  L  +PS +    ++GLF
Sbjct: 664 PDSFIEAPNKTLPSLPSTLTKNSKQGLF 691


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,490
Number of Sequences: 429
Number of extensions: 360
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of query: 58
length of database: 140,377
effective HSP length: 38
effective length of query: 20
effective length of database: 124,075
effective search space:  2481500
effective search space used:  2481500
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (19.0 bits)
S2: 35 (18.2 bits)