GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001519-TA|BGIBMGA001519-PA|undefined
         (58 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g38520.1 68418.m04658 hydrolase, alpha/beta fold family prote...    25   6.4  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    25   8.4  
At4g38870.1 68417.m05504 F-box family protein contains Pfam prof...    25   8.4  

>At5g38520.1 68418.m04658 hydrolase, alpha/beta fold family protein
           low similarity to hydrolase [Terrabacter sp. DBF63]
           GI:14196240; contains Pfam profile PF00561: hydrolase,
           alpha/beta fold family
          Length = 362

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 13/27 (48%), Positives = 14/27 (51%)

Query: 6   NKIAKDDALLAIIPSDINTEGRKGLFV 32
           NK   DD L+ II    NTEG    FV
Sbjct: 249 NKDNVDDTLVEIIAGPANTEGALDAFV 275


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/25 (40%), Positives = 17/25 (68%)

Query: 14  LLAIIPSDINTEGRKGLFVLAASLC 38
           +L +I + INT+G + L  LA ++C
Sbjct: 245 MLKLISTPINTKGYEALLDLAENIC 269


>At4g38870.1 68417.m05504 F-box family protein contains Pfam
           profile: PF00646 F-box domain
          Length = 426

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 15/38 (39%), Positives = 22/38 (57%), Gaps = 5/38 (13%)

Query: 1   MKKPCN-----KIAKDDALLAIIPSDINTEGRKGLFVL 33
           +K PCN     K+AK +  LA+I  +  T G  GL++L
Sbjct: 291 IKVPCNFRSFSKLAKYEGKLAVIFYEKKTSGIIGLWIL 328


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.317    0.131    0.385 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,252,644
Number of Sequences: 28952
Number of extensions: 33114
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 52
Number of HSP's gapped (non-prelim): 3
length of query: 58
length of database: 12,070,560
effective HSP length: 38
effective length of query: 20
effective length of database: 10,970,384
effective search space: 219407680
effective search space used: 219407680
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)