GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001518-TA|BGIBMGA001518-PA|undefined
         (398 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    36   0.010
SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces p...    30   0.66 
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        29   1.5  
SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces ...    28   2.0  
SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|...    28   2.0  
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac...    27   3.5  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    27   4.6  
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ...    27   6.1  
SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyc...    27   6.1  
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   6.1  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   8.1  
SPAC32A11.03c |phx1||homeobox transcription factor Phx1|Schizosa...    26   8.1  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    26   8.1  

>SPBC2G2.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 35.9 bits (79), Expect = 0.010
 Identities = 40/171 (23%), Positives = 70/171 (40%), Gaps = 11/171 (6%)

Query: 129 KSSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNL 188
           K ++  Q    +   K D  +    ++NT+RG   N  D +   +ES+   EE +LI  L
Sbjct: 250 KKNWGRQSNSPNSNKKTDH-AYPGASMNTERGLIQNLEDSDDIHEESSDTLEEPLLINEL 308

Query: 189 SSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIVP 248
           +  S    N    + +KL   E N +  NL     + K +       S++D+++   +  
Sbjct: 309 NRTSFLNSN----NNLKLNEAEENQNLLNLRSPKSSGKADNLTIKSSSNIDKVTSNDLY- 363

Query: 249 SLIAPSQSYAKVVAVQNNDGFTSVQSKKKRNNKFKXXXXXXXXESNEKFRS 299
            L    QS+ KV   Q     T++  K+  N+ F          ++  F S
Sbjct: 364 -LDNNLQSHFKVTESQP----TNLGRKEYSNSPFSIRARKDAATTSSSFES 409


>SPBC543.09 |||mitochondrial m-AAA protease|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 773

 Score = 29.9 bits (64), Expect = 0.66
 Identities = 27/124 (21%), Positives = 48/124 (38%), Gaps = 2/124 (1%)

Query: 130 SSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLS 189
           S +V +D    LR      + S+ +    + +  +     F S + N G  E+  I  +S
Sbjct: 21  SKFVKKDNFSSLRL-ARAYTFSTRSTAVSQFSLLSLSQRSFQSLKINKGIPEKHKIPLIS 79

Query: 190 SNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKG-NGNDESLLSSVDQLSERIIVP 248
           S   +  +    +G      + NG  N   + +   KG NGND   +  +      I+  
Sbjct: 80  SKQFSVTSKRSQNGSSGSNSDANGRKNGQKNDDSKKKGLNGNDPKKVFEIALNGNTILGG 139

Query: 249 SLIA 252
            L+A
Sbjct: 140 ILVA 143


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 34/118 (28%), Positives = 52/118 (44%), Gaps = 13/118 (11%)

Query: 140  DLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTEN-- 197
            D++     +S   T   + RGA   K D+E   +E ++  EE   +KNL    I  +   
Sbjct: 913  DVKIDIGDVSTEETTPVSVRGA---KADVENAIKEISAIAEE---VKNLVEKVIKIDREY 966

Query: 198  ---LIEGSGIKLRRY--ELNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIVPSL 250
               LI  +G KL+    E  GS +      + S  NGN E   +SV    ++ IV +L
Sbjct: 967  HRYLIGPNGSKLQNTIKECGGSTDKTETARLISFSNGNSEEERNSVVLRGDKEIVEAL 1024


>SPAC19A8.02 |||transcriptional coactivator |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1213

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 22/81 (27%), Positives = 34/81 (41%), Gaps = 3/81 (3%)

Query: 143 TKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTENLIEGS 202
           TKCD   M+  NI T R           T + +   C     I +  ++SI   + I+  
Sbjct: 643 TKCDYFYMNIQNIGTVRFRLYLDSSKALTDRLNVLLCN---YIADKPNSSIQLLSCIKRL 699

Query: 203 GIKLRRYELNGSDNNLSHHNV 223
              ++R+E  G DN L  + V
Sbjct: 700 NDDVKRFERGGDDNALKSYGV 720


>SPAC30D11.14c |||RNA-binding protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 2.0
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 205 KLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIVPSLIAPSQSY 257
           + RR E N  +N+ S  N ++ GNGN E+       L E++ +   + PS+ +
Sbjct: 253 RFRRREDNERNNSNSPRNFSTHGNGNGENGQPRRKWLEEKVYIN--LTPSRGF 303


>SPAC18B11.10 |tup11||transcriptional corepressor
           Tup11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 614

 Score = 27.5 bits (58), Expect = 3.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)

Query: 211 LNGSDNNLSHHNVASKGNGNDESLLSSVDQLSE 243
           L    N L+HH+ ASK  GND        Q+ E
Sbjct: 17  LKAEYNALAHHSFASKARGNDYESSMIQSQIQE 49


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 24/117 (20%), Positives = 44/117 (37%), Gaps = 5/117 (4%)

Query: 164 NKIDMEFTSQESNSG--CEEQVLIKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHH 221
           +K+  +F   E + G  C+E +  +   S    TEN+        RR  L      +SH 
Sbjct: 59  SKVTTDFCKLEESKGIICQENLHTEGAKSK---TENISGEDKSSQRRTRLKQIQEFISHR 115

Query: 222 NVASKGNGNDESLLSSVDQLSERIIVPSLIAPSQSYAKVVAVQNNDGFTSVQSKKKR 278
                 N N       + + +    V S ++  +S+ K    + N   + +  + KR
Sbjct: 116 RSFLNSNANSVESEKILAENNHMFNVKSKLSNKESFIKTRRPRTNGELSDLSLQPKR 172


>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
           Cct7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 558

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 17/79 (21%), Positives = 33/79 (41%)

Query: 127 AIKSSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIK 186
           AI      + +++DL TKC   +M+S  I +    F   +     + +     E  + IK
Sbjct: 144 AIHLDLSDEGKLRDLLTKCASTAMNSKLIRSNSTFFTKMVVDAVLTLDQEDLNENMIGIK 203

Query: 187 NLSSNSINTENLIEGSGIK 205
            +   ++    L++G   K
Sbjct: 204 KVPGGAMEDSLLVKGVAFK 222


>SPAC18G6.10 |||chromosome segregation protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 688

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 17/68 (25%), Positives = 30/68 (44%)

Query: 234 LLSSVDQLSERIIVPSLIAPSQSYAKVVAVQNNDGFTSVQSKKKRNNKFKXXXXXXXXES 293
           LLSS +  S ++  P +    Q+ A    +Q+   FT+V  +  R+ +F         ES
Sbjct: 193 LLSSSNNFSPQLRSPKISHRLQTSATSSPLQHKRPFTNVPERVSRDIEFAPLDSARPSES 252

Query: 294 NEKFRSAD 301
           +  +   D
Sbjct: 253 SSPYSEVD 260


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 15/37 (40%), Positives = 22/37 (59%), Gaps = 1/37 (2%)

Query: 162 FCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTENL 198
           F    D E T  ES+S  E+Q L K LSS S+++ ++
Sbjct: 601 FLENHDWE-TCSESSSASEDQSLCKQLSSFSLSSSDI 636


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 28/173 (16%), Positives = 62/173 (35%), Gaps = 2/173 (1%)

Query: 128 IKSSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKN 187
           + SS           T   + + S  + ++   +  + +    +S  ++S      +I +
Sbjct: 216 VSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISS 275

Query: 188 LSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIV 247
            SS+S +  +    S I       +   +  S  + +S  + +  S LSS    S     
Sbjct: 276 SSSSSSSPTST--SSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSSFS 333

Query: 248 PSLIAPSQSYAKVVAVQNNDGFTSVQSKKKRNNKFKXXXXXXXXESNEKFRSA 300
            S  + S + +   +  ++  F+S  S  K ++ F          S+    S+
Sbjct: 334 SSPTSSSSTISSSSSSPSSSSFSSTTSSSKSSSSFSSTVSSSSSTSSSTLTSS 386


>SPAC32A11.03c |phx1||homeobox transcription factor
           Phx1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 942

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/35 (34%), Positives = 22/35 (62%), Gaps = 1/35 (2%)

Query: 190 SNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVA 224
           + ++ + N++EGS  +L  YE + S +   HHN+A
Sbjct: 681 TQAMKSANVLEGSSTRLNSYEPSVS-SAYPHHNLA 714


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 12/37 (32%), Positives = 20/37 (54%), Gaps = 3/37 (8%)

Query: 319 DITDYIYKKTGENVTLEGINIKQQCEHNAYKFIVSQR 355
           D+TD   KK+ +NV     N++Q    N YK ++  +
Sbjct: 90  DVTD---KKSFDNVRTWFSNVEQHASENVYKILIGNK 123


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.313    0.129    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,668,718
Number of Sequences: 5004
Number of extensions: 66603
Number of successful extensions: 171
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 164
Number of HSP's gapped (non-prelim): 15
length of query: 398
length of database: 2,362,478
effective HSP length: 74
effective length of query: 324
effective length of database: 1,992,182
effective search space: 645466968
effective search space used: 645466968
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 55 (26.2 bits)