GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001518-TA|BGIBMGA001518-PA|undefined
         (398 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0574 + 4051723-4051805,4051913-4052366                           31   2.1  
04_01_0508 + 6647812-6647820,6647864-6648226,6649351-6650673,665...    30   3.7  
12_02_1035 - 25570009-25571241,25571940-25573709,25573797-255751...    29   4.9  
09_04_0165 + 15274448-15277336                                         29   8.6  
06_03_1511 - 30669292-30669401,30669894-30669930,30670012-306701...    29   8.6  

>06_01_0574 + 4051723-4051805,4051913-4052366
          Length = 178

 Score = 30.7 bits (66), Expect = 2.1
 Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 2/59 (3%)

Query: 217 NLSHHNVASKGNGNDE-SLLSSVDQLSERIIVPSLIAPSQSYAKVVAVQN-NDGFTSVQ 273
           NL+    A +GN ND+ S  SS    S R ++PSL A + +     A    + GF   Q
Sbjct: 100 NLASVQAAQRGNSNDDDSTTSSSAAASSRAVIPSLPAAAGALGNAAATAEWSGGFLEEQ 158


>04_01_0508 +
           6647812-6647820,6647864-6648226,6649351-6650673,
           6653569-6653766,6654485-6654568,6655175-6655920,
           6656480-6657341
          Length = 1194

 Score = 29.9 bits (64), Expect = 3.7
 Identities = 24/96 (25%), Positives = 41/96 (42%), Gaps = 3/96 (3%)

Query: 152 STNINTKRGAFCNKIDM-EFTSQESNSGCEEQVLIKNLSSNSINTENLIEGSGIKLRRYE 210
           S + N +   F  K  M +   QE        ++I +   NSI  E L   +   +  + 
Sbjct: 644 SNHENLQHAIFLRKAGMLDNRPQEEKDRMGAIIVISDNHDNSICMEAL--STNYNIHTFG 701

Query: 211 LNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERII 246
            NG  N  + +N+AS+ NG  + L    + ++E  I
Sbjct: 702 FNGMHNVRAMYNIASRSNGMYDLLNDDRNLITEAFI 737


>12_02_1035 -
           25570009-25571241,25571940-25573709,25573797-25575118,
           25575208-25575555,25576540-25576633
          Length = 1588

 Score = 29.5 bits (63), Expect = 4.9
 Identities = 26/111 (23%), Positives = 54/111 (48%), Gaps = 4/111 (3%)

Query: 137 EMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTE 196
           E+++LR K   +  S  ++N+K   F ++  M     E  S   E++  KN+   ++ +E
Sbjct: 490 EVEELREKKVALEESCKHLNSKINGFQSERSMFIARIEGISHTMEKLSEKNVFLENLLSE 549

Query: 197 NLIEGSGIKLRRYELNGSDNNL-SHHNVASKGNGNDESLLSSVDQLSERII 246
           N  E   +++ R +LN S+ +  +  N  S       +L+  VD ++  ++
Sbjct: 550 NNTE---LEILRRKLNDSEESTHALLNQNSVLRSEKRTLVREVDSMNGALL 597


>09_04_0165 + 15274448-15277336
          Length = 962

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 2/94 (2%)

Query: 177 SGCEEQVLIKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLS 236
           +GCE      N+  N    +  IEG    L   +  G + +L  +N   K  G    +  
Sbjct: 850 AGCEFDHYTYNIMINIYGRKGWIEGVANVLAELKSRGGEPDLYSYNTLIKAYG-IAGMPE 908

Query: 237 SVDQLSERIIVPSLIAPSQSYAKVV-AVQNNDGF 269
              +L + + +  + A   +Y  ++ A+Q N+ F
Sbjct: 909 DAVKLMQEMRIKGIAADRVTYTNLIAALQRNENF 942


>06_03_1511 - 30669292-30669401,30669894-30669930,30670012-30670107,
            30670186-30670281,30670679-30670828,30670956-30671100,
            30671178-30671251,30671325-30671445,30671697-30671821,
            30671898-30672047,30672249-30672324,30672496-30672557,
            30672597-30672839,30673354-30673683,30673776-30673932,
            30674008-30674139,30674219-30674277,30674734-30674798,
            30674878-30675094,30675413-30675499,30675655-30675750,
            30675938-30676003,30676096-30676287,30676380-30676532,
            30676812-30677052,30677322-30677515,30678212-30678348,
            30678474-30678480,30678708-30678830,30679370-30679427,
            30680018-30680090,30680493-30681765
          Length = 1714

 Score = 28.7 bits (61), Expect = 8.6
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 21   IQNKILIADEASLVKICASAFTSEQIQKSKTLLLESLSAEVPGTARQGKGKENRVLNDII 80
            IQ  +++ +E S ++IC   F   +I K K   L+ L+     T   GK     +  D++
Sbjct: 1593 IQQVLMLDNEGSSLEICGEDFFKLEINKIKETSLQWLAKAEKTTLDSGK-----LALDLV 1647

Query: 81   AIFKTEPDALPVFVARDLNKL 101
                 E ++L V V ++L  L
Sbjct: 1648 YGLIIEGESLTVHVEKELKLL 1668


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.313    0.129    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,631,812
Number of Sequences: 37544
Number of extensions: 356344
Number of successful extensions: 651
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 651
Number of HSP's gapped (non-prelim): 5
length of query: 398
length of database: 14,793,348
effective HSP length: 84
effective length of query: 314
effective length of database: 11,639,652
effective search space: 3654850728
effective search space used: 3654850728
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)