Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001518-TA|BGIBMGA001518-PA|undefined
(398 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.54
SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 2.2
SB_18221| Best HMM Match : HHH (HMM E-Value=0.65) 30 2.9
SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 3.8
SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.0
SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.6
SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26) 29 8.7
SB_29786| Best HMM Match : I-set (HMM E-Value=0) 29 8.7
SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 8.7
SB_35443| Best HMM Match : Condensation (HMM E-Value=0.006) 29 8.7
>SB_5839| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 778
Score = 32.7 bits (71), Expect = 0.54
Identities = 40/180 (22%), Positives = 67/180 (37%), Gaps = 11/180 (6%)
Query: 143 TKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTENLIEGS 202
+K + S S++N N+ + N ++ SNS N +SNS + N S
Sbjct: 442 SKSNSNSNSNSNSNSNSNSNSNSNSNSNSNSNSNSSSSSS---SNSNSNSNSNSNSNSNS 498
Query: 203 GIKLRRYELNGSD-NNLSHHNVASKGNGNDESLLSSVDQLSERIIVPSLIAPSQSYAKVV 261
+ SD NN S+ N S N N S + S + ++ A + + A V
Sbjct: 499 NSNSNSNSNSNSDSNNNSNSNSNSNSNSNSNS-----NSNSNSTVTVTVTATATATA-TV 552
Query: 262 AVQNNDGFTSVQSKKKRNNKFKXXXXXXXXESNEKFRSADRKTPMFITNVNKATLESDIT 321
V N+ +S + +N SN R+ + T AT+ + +T
Sbjct: 553 TVHNSSSSSSNSNSNSNSNSNSNSNSNSNSNSNSN-RTVTATVTVTATVTATATVTATVT 611
>SB_59350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 987
Score = 30.7 bits (66), Expect = 2.2
Identities = 15/38 (39%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
Query: 172 SQESNSGCEEQVLIKNLSSNSINTENLIEGSGIKLRRY 209
SQ N C E++ +KN+SSN + + N+ EG + RY
Sbjct: 705 SQPVNDTCVEKIEVKNVSSNHVGS-NVKEGLDNMIERY 741
>SB_18221| Best HMM Match : HHH (HMM E-Value=0.65)
Length = 324
Score = 30.3 bits (65), Expect = 2.9
Identities = 20/77 (25%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 243 ERIIVPSLIAPSQSYAKVVAVQNNDGFTSVQSKKKRNNKFKXXXXXXXXESNEKFRSAD- 301
ERI+ + S S+ ++ + D + ++ KKR K +S+ F D
Sbjct: 109 ERIVAQAKTKRSFSFGRIKPKEQEDPESGLEPSKKRR-PLKDSSPDKGSKSDPSFELEDS 167
Query: 302 -RKTPMFITNVNKATLE 317
+++P+ + NVN AT E
Sbjct: 168 AQQSPVCLVNVNTATEE 184
>SB_18584| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1022
Score = 29.9 bits (64), Expect = 3.8
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 205 KLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIVPSLIAPSQSYAKVV 261
KL+ + L S+ K N D S+ S++++L ER+ + LI S+S ++ V
Sbjct: 266 KLKEHRLRFSEKRQPSKVFTEKLNTFDASIASTLERLEERVELRDLIKGSRSNSRTV 322
>SB_27599| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2937
Score = 29.5 bits (63), Expect = 5.0
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 6/95 (6%)
Query: 185 IKNLSSNSINTENLIEGSGIKL---RRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQL 241
+++ N +NT + S KL R Y G + H NV +GN + +V
Sbjct: 986 LRSYGRNLVNTVCMDPDSNFKLVDMREYSHLGRKYKIVHANVXXXXSGNCSACAKTVGAS 1045
Query: 242 SERIIVPSLIAPSQSYAKVVAVQNNDGFTSVQSKK 276
+ + P L A S YA + ++ F + SK+
Sbjct: 1046 PDDAVFP-LRADSSVYA--ICTDSDSNFEVLDSKR 1077
>SB_21701| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1906
Score = 29.1 bits (62), Expect = 6.6
Identities = 13/49 (26%), Positives = 25/49 (51%)
Query: 186 KNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESL 234
KN SSN+ + ++I + I +N NN +++N + N+ S+
Sbjct: 1708 KNCSSNNSDNNSIINNNSINNNNSSINNRSNNHNNNNNSINNCNNNNSI 1756
Score = 29.1 bits (62), Expect = 6.6
Identities = 20/87 (22%), Positives = 42/87 (48%), Gaps = 5/87 (5%)
Query: 151 SSTNINTKRGAFCNKIDMEFTSQESNSGCEEQVLIKNLSSNSINTENLIEGSGIKLRRYE 210
++ +IN + N I+ +S +N+ I N +S+ IN + I + +
Sbjct: 1761 NNNSINNRNNTNNNSINNNNSSINNNNSS-----INNNNSSIINNNSSINNNNSSINNNN 1815
Query: 211 LNGSDNNLSHHNVASKGNGNDESLLSS 237
+ +NN S++N S N N+ S++++
Sbjct: 1816 SSIINNNSSNNNNNSSINNNNSSIINN 1842
>SB_53185| Best HMM Match : RWD (HMM E-Value=4.8e-26)
Length = 534
Score = 28.7 bits (61), Expect = 8.7
Identities = 15/50 (30%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 32 SLVKICASAFT-SEQIQKSKTLLLESLSAEVPGTARQGKGKENRVLNDII 80
+L K C +A+ ++ + ++L+ ++ VPG A +G+GK N+ +ND++
Sbjct: 205 TLSKQCNAAYGHADNGDRYVPVILKDVAGLVPG-ACEGRGKGNKFMNDLL 253
>SB_29786| Best HMM Match : I-set (HMM E-Value=0)
Length = 6300
Score = 28.7 bits (61), Expect = 8.7
Identities = 21/75 (28%), Positives = 38/75 (50%), Gaps = 3/75 (4%)
Query: 12 IVIDEL-LAYIQNKILIADEASLVKICASAFTSEQIQKSKTLLLESLSAEVPGTARQGKG 70
+V DEL +AY + K L+ D L+ +CA+ F+S + K ++ ++ G
Sbjct: 681 VVTDELKIAYQRFKTLMTDYEVLLAMCATFFSS--VDKFLQMVDHMMAVFRSGQVAPDLH 738
Query: 71 KENRVLNDIIAIFKT 85
+ +L D +A F+T
Sbjct: 739 RAQLMLQDHLANFRT 753
>SB_17203| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2672
Score = 28.7 bits (61), Expect = 8.7
Identities = 28/107 (26%), Positives = 52/107 (48%), Gaps = 4/107 (3%)
Query: 135 QDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDM-EFTSQESNSGCE--EQVLIKNLSSN 191
++ +++ R D + +S R F +KI++ E +E+ + E L K LS N
Sbjct: 923 EELLEEKRLNYDAMQLSEREATQVRREFESKINLTEKLLKETTEKLDVAETRLEKVLSEN 982
Query: 192 SINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLSSV 238
S ++++ I+ + E +D+N S N+ S+ N ESL + V
Sbjct: 983 S-DSQSKIQRLQETVSHVEQRLTDSNTSDQNLISELNSKVESLEADV 1028
>SB_35443| Best HMM Match : Condensation (HMM E-Value=0.006)
Length = 558
Score = 28.7 bits (61), Expect = 8.7
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Query: 165 KIDMEFTSQESNSGCEEQVLIKNLS--SNSINTENLIEGSGIKLRR 208
KID +F S S C + + + N S N ++ E G +++RR
Sbjct: 492 KIDCQFLIYSSMSACHKDIKLDNTSYTKNGVDLETKSNGDYVRVRR 537
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.313 0.129 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,776,388
Number of Sequences: 59808
Number of extensions: 450277
Number of successful extensions: 958
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 945
Number of HSP's gapped (non-prelim): 21
length of query: 398
length of database: 16,821,457
effective HSP length: 84
effective length of query: 314
effective length of database: 11,797,585
effective search space: 3704441690
effective search space used: 3704441690
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 61 (28.7 bits)
- SilkBase 1999-2023 -