Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001518-TA|BGIBMGA001518-PA|undefined
(398 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
DQ109808-1|AAZ83370.1| 2479|Homo sapiens nephrocystin-6 protein. 32 3.1
BC039102-1|AAH39102.1| 268|Homo sapiens Unknown (protein for IM... 32 3.1
AB002371-1|BAA20828.2| 1540|Homo sapiens KIAA0373 protein. 32 3.1
BC066592-1|AAH66592.1| 1516|Homo sapiens CUTL1 protein protein. 31 9.4
BC050713-1|AAH50713.1| 233|Homo sapiens vacuolar protein sortin... 31 9.4
BC019321-1|AAH19321.1| 221|Homo sapiens vacuolar protein sortin... 31 9.4
BC006485-1|AAH06485.1| 221|Homo sapiens vacuolar protein sortin... 31 9.4
AF316887-1|AAK00314.1| 221|Homo sapiens vacuolar sorting protei... 31 9.4
AF182844-1|AAF00499.1| 221|Homo sapiens VPS28 protein protein. 31 9.4
>DQ109808-1|AAZ83370.1| 2479|Homo sapiens nephrocystin-6 protein.
Length = 2479
Score = 32.3 bits (70), Expect = 3.1
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Query: 123 AEIKAIKSSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQ 182
A+ K+ KS VT+ L+ I+ + +I + + E + N E+Q
Sbjct: 2261 ADSKSWKSIVVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQ 2320
Query: 183 VLIKNLSSNSINTENLI--EGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQ 240
+ I TE + E ++L ++L+ L H A+K ES + DQ
Sbjct: 2321 IKILKHVPEGAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTIPDADQ 2380
Query: 241 LSERI 245
L E+I
Sbjct: 2381 LKEKI 2385
>BC039102-1|AAH39102.1| 268|Homo sapiens Unknown (protein for
IMAGE:4829003) protein.
Length = 268
Score = 32.3 bits (70), Expect = 3.1
Identities = 39/160 (24%), Positives = 65/160 (40%), Gaps = 18/160 (11%)
Query: 229 GNDESLLSSVDQLSERIIVPSLIAPSQSYAKVVAVQNNDGFTSVQSKKKRNNKFKXXXXX 288
G +E L S D + E+ L + Q Y +A ++ + KK +K
Sbjct: 102 GENEQLKISADLIKEK-----LKSHEQEYKNNIAKLVSEMKIKEEGYKKEISKLYQDMQR 156
Query: 289 XXXESNEKFRSADRKTPMFITNVNKATLESDITDYIYKKTGENVTLEGINIKQQCEHNAY 348
+ EK + K M I+ +N A L S + + K E IK Q E +A
Sbjct: 157 KVELNEEKHKELIEKKEMEISELN-AKLRSQVKE----KQNEI-------IKLQLEFDA- 203
Query: 349 KFIVSQRKLHMFMDDKLWPEGIIFRRFVHYRPKRNNETSV 388
K Q K + D + P+ I R+ H++ ++N E ++
Sbjct: 204 KLARVQTKSKSYQDSTVLPQSIYRRKLQHFKEEKNKEIAI 243
>AB002371-1|BAA20828.2| 1540|Homo sapiens KIAA0373 protein.
Length = 1540
Score = 32.3 bits (70), Expect = 3.1
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 2/125 (1%)
Query: 123 AEIKAIKSSYVTQDEMQDLRTKCDMISMSSTNINTKRGAFCNKIDMEFTSQESNSGCEEQ 182
A+ K+ KS VT+ L+ I+ + +I + + E + N E+Q
Sbjct: 1322 ADSKSWKSIVVTRMYETKLKELETDIAKKNQSITDLKQLVKEATEREQKVNKYNEDLEQQ 1381
Query: 183 VLIKNLSSNSINTENLI--EGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQ 240
+ I TE + E ++L ++L+ L H A+K ES + DQ
Sbjct: 1382 IKILKHVPEGAETEQGLKRELQVLRLANHQLDKEKAELIHQIEANKDQSGAESTIPDADQ 1441
Query: 241 LSERI 245
L E+I
Sbjct: 1442 LKEKI 1446
>BC066592-1|AAH66592.1| 1516|Homo sapiens CUTL1 protein protein.
Length = 1516
Score = 30.7 bits (66), Expect = 9.4
Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 1/67 (1%)
Query: 212 NGSDNNLSHHNVASKGNGNDESLLSSVDQLSERIIVPSLIAPSQSYAKVVAVQNNDGFTS 271
NGS+ N++ AS+ G+DE++ S ++Q + V P+Q + + ++D S
Sbjct: 661 NGSEGNITTRIRASE-TGSDEAIKSILEQAKRELQVQKTAEPAQPSSASGSGNSDDAIRS 719
Query: 272 VQSKKKR 278
+ + +R
Sbjct: 720 ILQQARR 726
>BC050713-1|AAH50713.1| 233|Homo sapiens vacuolar protein sorting
28 homolog (S. cerevisiae) protein.
Length = 233
Score = 30.7 bits (66), Expect = 9.4
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 52 LLLESLSAEVPGTARQGKGKENRVLNDIIAIFKTEPDALPVFVARDLNKLPP 103
L +E + + P T + KG NR + D++++F T D L + + R ++++ P
Sbjct: 105 LAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEI-RAMDEIQP 155
>BC019321-1|AAH19321.1| 221|Homo sapiens vacuolar protein sorting
28 homolog (S. cerevisiae) protein.
Length = 221
Score = 30.7 bits (66), Expect = 9.4
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 52 LLLESLSAEVPGTARQGKGKENRVLNDIIAIFKTEPDALPVFVARDLNKLPP 103
L +E + + P T + KG NR + D++++F T D L + + R ++++ P
Sbjct: 105 LAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEI-RAMDEIQP 155
>BC006485-1|AAH06485.1| 221|Homo sapiens vacuolar protein sorting
28 homolog (S. cerevisiae) protein.
Length = 221
Score = 30.7 bits (66), Expect = 9.4
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 52 LLLESLSAEVPGTARQGKGKENRVLNDIIAIFKTEPDALPVFVARDLNKLPP 103
L +E + + P T + KG NR + D++++F T D L + + R ++++ P
Sbjct: 105 LAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEI-RAMDEIQP 155
>AF316887-1|AAK00314.1| 221|Homo sapiens vacuolar sorting protein
28 protein.
Length = 221
Score = 30.7 bits (66), Expect = 9.4
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 52 LLLESLSAEVPGTARQGKGKENRVLNDIIAIFKTEPDALPVFVARDLNKLPP 103
L +E + + P T + KG NR + D++++F T D L + + R ++++ P
Sbjct: 105 LAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEI-RAMDEIQP 155
>AF182844-1|AAF00499.1| 221|Homo sapiens VPS28 protein protein.
Length = 221
Score = 30.7 bits (66), Expect = 9.4
Identities = 15/52 (28%), Positives = 30/52 (57%), Gaps = 1/52 (1%)
Query: 52 LLLESLSAEVPGTARQGKGKENRVLNDIIAIFKTEPDALPVFVARDLNKLPP 103
L +E + + P T + KG NR + D++++F T D L + + R ++++ P
Sbjct: 105 LAMERIKEDRPITIKDDKGNLNRCIADVVSLFITVMDKLRLEI-RAMDEIQP 155
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.313 0.129 0.356
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,632,333
Number of Sequences: 224733
Number of extensions: 1694126
Number of successful extensions: 2997
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 2994
Number of HSP's gapped (non-prelim): 12
length of query: 398
length of database: 73,234,838
effective HSP length: 92
effective length of query: 306
effective length of database: 52,559,402
effective search space: 16083177012
effective search space used: 16083177012
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 66 (30.7 bits)
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