GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001518-TA|BGIBMGA001518-PA|undefined
         (398 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          27   0.37 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   0.86 
AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex det...    24   2.6  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    22   8.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.0  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   8.0  

>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 26.6 bits (56), Expect = 0.37
 Identities = 15/68 (22%), Positives = 27/68 (39%)

Query: 166 IDMEFTSQESNSGCEEQVLIKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVAS 225
           ID +   +E        V+++    NS N+      +         N ++NN +++    
Sbjct: 197 IDWQPEDEECTEATAGAVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGAND 256

Query: 226 KGNGNDES 233
            GNGN  S
Sbjct: 257 NGNGNGAS 264


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 25.4 bits (53), Expect = 0.86
 Identities = 15/41 (36%), Positives = 25/41 (60%), Gaps = 1/41 (2%)

Query: 181 EQVLIKNLSSNSINTENLIEGSGIKL-RRYELNGSDNNLSH 220
           EQ+L+ NL+ N + ++ + E + + L R   LN S N L+H
Sbjct: 309 EQLLVLNLAGNRLGSDRVDETTFLGLIRLIVLNLSYNMLTH 349


>AY350617-1|AAQ57659.1|  428|Apis mellifera complementary sex
           determiner protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 18/68 (26%), Positives = 35/68 (51%), Gaps = 11/68 (16%)

Query: 181 EQVLIKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGNDESLLSSVDQ 240
           E  +I +LS+ +I+  N           Y+ N ++NN +++N  +  N N + L  ++  
Sbjct: 311 EPKIISSLSNKTIHNNN----------NYKYNYNNNNYNNNNYNNNYNNNCKKLYYNIIN 360

Query: 241 LSERIIVP 248
           + E+I VP
Sbjct: 361 I-EQIPVP 367


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 2/73 (2%)

Query: 165 KIDMEFTSQESNSGCEEQVLIKNLSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVA 224
           K+D +F   + N+  +     K+  SNS N++ L + +  K     +N  +++   +   
Sbjct: 125 KLDQKFIFPQENNYNDNYFYSKSNGSNSSNSDVLFKQN--KEEEQTINRKNSDYLDNQEV 182

Query: 225 SKGNGNDESLLSS 237
           S  N  ++S   S
Sbjct: 183 SMENTENKSCTDS 195


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 17/56 (30%), Positives = 28/56 (50%), Gaps = 1/56 (1%)

Query: 177 SGCEEQVLIKN-LSSNSINTENLIEGSGIKLRRYELNGSDNNLSHHNVASKGNGND 231
           S  EE+ + K  ++SN I ++N +  S  KL++  LN   +  S  +  S    ND
Sbjct: 330 SDVEERRVSKTAMNSNQIVSDNSLSSSEEKLKQDILNLRTDISSSSSSISSSEEND 385


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 8.0
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 4/31 (12%)

Query: 180  EEQVLIKNL-SSNS---INTENLIEGSGIKL 206
            ++++L K L SSNS   I+ ENL+   G+KL
Sbjct: 1110 QQKILAKVLTSSNSGQLISVENLLAQKGLKL 1140


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.313    0.129    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,285
Number of Sequences: 429
Number of extensions: 5192
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 7
length of query: 398
length of database: 140,377
effective HSP length: 59
effective length of query: 339
effective length of database: 115,066
effective search space: 39007374
effective search space used: 39007374
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)