Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001517-TA|BGIBMGA001517-PA|undefined
         (96 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   0.25 
SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   0.77 
SB_13509| Best HMM Match : Acylphosphatase (HMM E-Value=1.6)           27   2.4  
SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)              26   4.1  
SB_45196| Best HMM Match : DUF58 (HMM E-Value=8.6)                     26   5.5  
SB_25714| Best HMM Match : DUF1077 (HMM E-Value=3.1)                   25   7.2  
SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)                25   7.2  
SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 25   7.2  
SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)                 25   7.2  
SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)                 25   7.2  
SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)                25   9.5  
SB_53507| Best HMM Match : DUF1610 (HMM E-Value=2)                     25   9.5  
SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.)              25   9.5  
SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)               25   9.5  

>SB_46599| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4482

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 16/45 (35%), Positives = 25/45 (55%)

Query: 28   ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLRAAL 72
            +T   H+THA  +L  DSP  +S  G +  A   + + C+ +AAL
Sbjct: 3656 VTIPCHNTHAWAELPTDSPTITSVHGLDFEAEGELRSLCQEKAAL 3700


>SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.7 bits (61), Expect = 0.77
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 9   AHDRIINAWGHTSPAWQLCI-TWTT-HDTHATFKLSLDSPQTSSSTGDN 55
           A D +IN W   + AW   I TW T  +T  T   + D+      TG N
Sbjct: 70  AWDTVINTWDTVTNAWDTVINTWDTGTNTRDTVTNARDAVTNMRDTGTN 118


>SB_13509| Best HMM Match : Acylphosphatase (HMM E-Value=1.6)
          Length = 166

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 28  ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLRAAL 72
           +T   H+ HA  KL  + P  +S  G +  A   + + C+ +AAL
Sbjct: 56  VTTPCHNNHAWAKLPTEPPAITSVHGIDFEAEGELRSLCQEKAAL 100


>SB_55935| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1485

 Score = 26.2 bits (55), Expect = 4.1
 Identities = 24/60 (40%), Positives = 28/60 (46%), Gaps = 5/60 (8%)

Query: 15   NAWG-HTSPAWQLCITWT---THDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLRA 70
            NA+G HTSP  QLC+      T D  +T   S DS  + S T    A    VS H   RA
Sbjct: 955  NAFGTHTSPGKQLCLATAGGRTADQGSTDCRSGDS-ASRSRTVQISAVSHGVSRHLDTRA 1013


>SB_45196| Best HMM Match : DUF58 (HMM E-Value=8.6)
          Length = 241

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 13/45 (28%), Positives = 24/45 (53%)

Query: 28  ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLRAAL 72
           +T   H+ HA  +L  + P  +S+ G +  A   + + C+ +AAL
Sbjct: 56  VTIPCHNNHAWAELPTEPPAITSAHGLDFEAEGKLRSLCQEKAAL 100


>SB_25714| Best HMM Match : DUF1077 (HMM E-Value=3.1)
          Length = 366

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 18  GHTSPAWQLCITWTTHDTHATFKLSLDSPQ-TSSSTGDNHAAFSSVSTHCKLRAALATR 75
           G +S A QL  T +T  T+    L+L   Q   +S   +HA    ++T+   R+ALATR
Sbjct: 173 GSSSTASQL-YTRSTLATNQPHSLTLTGNQFLKNSLATDHAQTGVLATNQMQRSALATR 230


>SB_15247| Best HMM Match : Hormone_5 (HMM E-Value=0.98)
          Length = 997

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 21/59 (35%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 18  GHTSPAWQLCITWTTHDTHATFKLSLDSPQ-TSSSTGDNHAAFSSVSTHCKLRAALATR 75
           G +S A QL  T +T  T+    L+L   Q   +S   +HA    ++T+   R+ALATR
Sbjct: 854 GSSSTASQL-YTRSTLATNQPHSLTLTGNQFLKNSLATDHAQTGVLATNQMQRSALATR 911


>SB_13438| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 672

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 18  GHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDN 55
           GHTS   Q C   T+ DTH     +LD  Q +  T D+
Sbjct: 537 GHTSNDTQ-CNGRTSDDTHNCNGQTLDDTQCNGQTSDS 573


>SB_10730| Best HMM Match : 7tm_1 (HMM E-Value=1.5e-24)
          Length = 654

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 1/38 (2%)

Query: 18  GHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDN 55
           GHTS   Q C   T+ DTH     +LD  Q +  T D+
Sbjct: 519 GHTSNDTQ-CNGRTSDDTHNCNGQTLDDTQCNGQTSDS 555


>SB_16968| Best HMM Match : Laminin_EGF (HMM E-Value=0)
          Length = 1101

 Score = 25.4 bits (53), Expect = 7.2
 Identities = 11/32 (34%), Positives = 17/32 (53%)

Query: 45  SPQTSSSTGDNHAAFSSVSTHCKLRAALATRT 76
           +P    STG +H   ++VS  C  +  + TRT
Sbjct: 776 APCDCVSTGSHHLVCNAVSGQCPCKPGVITRT 807


>SB_46990| Best HMM Match : Keratin_B2 (HMM E-Value=4.6)
          Length = 782

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)

Query: 28  ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLRAAL 72
           IT   H+ HA  +L  + P  +S  G +  A   + + C+ +AAL
Sbjct: 91  ITIPCHNNHAWAELPTEPPAIASVHGLDFEAEGELRSLCQEKAAL 135


>SB_53507| Best HMM Match : DUF1610 (HMM E-Value=2)
          Length = 425

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 7   IAAHDRIINA-WGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTH 65
           + A D + N  W       +  +T   H+ HA  +L  + P  +S  G +  A   + + 
Sbjct: 103 LVAVDALSNVLWDSGKYKTKARVTIPCHNNHAWAELPTEPPAITSVHGLDFEAEGELRSL 162

Query: 66  CKLRAAL 72
           C+ +AAL
Sbjct: 163 CQEKAAL 169


>SB_42615| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1130

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 13/45 (28%), Positives = 23/45 (51%)

Query: 28  ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLRAAL 72
           +T   H+ HA  +L  + P  +S  G +  A   + + C+ +AAL
Sbjct: 326 VTIPCHNNHARAELPTEPPAITSVHGLDFEAEGELRSLCQEKAAL 370


>SB_4488| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 645

 Score = 25.0 bits (52), Expect = 9.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)

Query: 18  GHTSPAWQLCI 28
           GHT P W LC+
Sbjct: 458 GHTGPVWALCV 468


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.123    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,727,859
Number of Sequences: 59808
Number of extensions: 90257
Number of successful extensions: 214
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 207
Number of HSP's gapped (non-prelim): 14
length of query: 96
length of database: 16,821,457
effective HSP length: 70
effective length of query: 26
effective length of database: 12,634,897
effective search space: 328507322
effective search space used: 328507322
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)