GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001517-TA|BGIBMGA001517-PA|undefined
         (96 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    30   0.054
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   2.0  
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb...    24   3.5  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    24   3.5  
SPAC57A7.08 |pzh1||serine/threonine protein phosphatase Pzh1|Sch...    24   4.7  
SPAC29B12.10c |||OPT oligopeptide transporter family|Schizosacch...    23   6.2  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 30.3 bits (65), Expect = 0.054
 Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 2/58 (3%)

Query: 6   FIAAHDRIINAWGHTSPAWQLCI-TW-TTHDTHATFKLSLDSPQTSSSTGDNHAAFSS 61
           F A   +I++  G T+   QL + +W T H  H     +L +P+   STG     F+S
Sbjct: 238 FYAERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGTGFVLFAS 295


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 25.0 bits (52), Expect = 2.0
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)

Query: 14  INAWGHTSPAWQLCITWTTHDTHATFKL---SLDSPQTSSSTGDNHAAFSSVSTHC 66
           +NA   T    ++  T  T DT A+  +   S  S  ++S+TG + +   S ST C
Sbjct: 60  LNASLSTGSPVEITSTSCTTDTSASTPIITESTSSTSSASTTGSSSSPLPSTSTSC 115



 Score = 23.4 bits (48), Expect = 6.2
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 28  ITWTTHDTHATFKLSLDSPQTS-SSTGDNHAAFSSVSTHCKLRAALAT 74
           IT T   T +T   S+  P TS SST  N +   + ST C    ++ T
Sbjct: 191 ITPTVPPT-STSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTSIPT 237



 Score = 23.4 bits (48), Expect = 6.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 28  ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 66
           +T T   T  +   +   P ++SSTG + +   S ST C
Sbjct: 301 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLPSTSTSC 339



 Score = 23.4 bits (48), Expect = 6.2
 Identities = 12/34 (35%), Positives = 19/34 (55%)

Query: 31  TTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVST 64
           +T+ T  TF  S     +SSST  +  +F+S S+
Sbjct: 643 STNRTSTTFTSSTSISTSSSSTATSSTSFASESS 676



 Score = 23.0 bits (47), Expect = 8.2
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 28  ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 66
           +T T   T  +   +   P ++SSTG + +   S ST C
Sbjct: 355 VTPTVPPTSTSSTSTPPPPASTSSTGTSSSPLLSTSTSC 393


>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1334

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 10/31 (32%), Positives = 19/31 (61%)

Query: 42  SLDSPQTSSSTGDNHAAFSSVSTHCKLRAAL 72
           SL  P+++S+  D H + +S S+H  + + L
Sbjct: 287 SLQLPKSTSNPADLHLSIASASSHKNIFSGL 317


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 24.2 bits (50), Expect = 3.5
 Identities = 13/60 (21%), Positives = 25/60 (41%)

Query: 14  INAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLRAALA 73
           +NAW     ++  C+T    +  A  K  L   +TSS        F  +    ++R +++
Sbjct: 533 VNAWNSLETSYYNCMTVLEDEVIAQLKSLLQYSKTSSQMFTTLMRFQPLFFRTRVRTSIS 592


>SPAC57A7.08 |pzh1||serine/threonine protein phosphatase
           Pzh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 515

 Score = 23.8 bits (49), Expect = 4.7
 Identities = 10/33 (30%), Positives = 19/33 (57%)

Query: 33  HDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTH 65
           H + +++ +S  SP + +S+G   + F S S H
Sbjct: 124 HSSSSSYAVSPTSPTSPTSSGPIGSNFDSASEH 156


>SPAC29B12.10c |||OPT oligopeptide transporter
          family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 851

 Score = 23.4 bits (48), Expect = 6.2
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 29 TWTTHDTHATFKLSLDSPQTSSSTGDNH 56
          T T   T  TF+ S     TSS +G++H
Sbjct: 35 TKTASKTSLTFRQSSSDESTSSYSGNHH 62



 Score = 23.4 bits (48), Expect = 6.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)

Query: 49  SSSTGDNHAAFSSVSTHCKL 68
           S ST  N AA +++ THC L
Sbjct: 481 SMSTALNFAAVTAIFTHCAL 500


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.319    0.123    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 352,717
Number of Sequences: 5004
Number of extensions: 11190
Number of successful extensions: 44
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 32
Number of HSP's gapped (non-prelim): 12
length of query: 96
length of database: 2,362,478
effective HSP length: 62
effective length of query: 34
effective length of database: 2,052,230
effective search space: 69775820
effective search space used: 69775820
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 47 (23.0 bits)