GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001517-TA|BGIBMGA001517-PA|undefined
         (96 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1377 - 29692895-29692899,29700435-29702190                       29   0.56 
07_03_1763 - 29316969-29318120                                         29   0.75 
12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561     28   0.98 
03_05_0026 + 19966616-19966703,19967992-19968058,19968599-199686...    28   1.3  
10_08_0269 - 16366392-16366403,16366469-16368262                       27   3.0  
05_02_0037 + 5883285-5884292                                           27   3.0  
04_03_0133 - 11653859-11653962,11658466-11658979                       26   5.3  
08_02_1237 + 25475219-25475916,25476127-25476320,25476407-254773...    25   6.9  
02_05_1223 + 35033273-35033353,35033455-35033539,35033613-350336...    25   6.9  

>06_03_1377 - 29692895-29692899,29700435-29702190
          Length = 586

 Score = 29.1 bits (62), Expect = 0.56
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 9   AHDRIINAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 66
           +H+R+  +      A    ++ T H  H    +S D    S++    H A SS+ST C
Sbjct: 439 SHERLTISHEKLKEAHDNLLSTTQHGAHIDVGISCDLLDDSATCHIAHVASSSISTSC 496


>07_03_1763 - 29316969-29318120
          Length = 383

 Score = 28.7 bits (61), Expect = 0.75
 Identities = 13/42 (30%), Positives = 20/42 (47%)

Query: 28  ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLR 69
           +++  H    TF +S+     S S G N   FS  + HC+ R
Sbjct: 190 VSYAVHPDQRTFFVSVKEAFCSRSDGGNKGTFSFDTKHCEWR 231


>12_02_1192 - 26884474-26885266,26885430-26885895,26886333-26886561
          Length = 495

 Score = 28.3 bits (60), Expect = 0.98
 Identities = 16/58 (27%), Positives = 25/58 (43%)

Query: 9   AHDRIINAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 66
           +H+R+  +      A    ++ T H  H    +S D    S+     H A SS+ST C
Sbjct: 372 SHERLTISHEKLKEAHDNLLSTTQHGAHIDAGISCDLLDDSAICHVAHVALSSISTSC 429


>03_05_0026 +
           19966616-19966703,19967992-19968058,19968599-19968677,
           19969140-19969231,19969961-19970396,19973749-19974099
          Length = 370

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 14/39 (35%), Positives = 19/39 (48%)

Query: 28  ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 66
           ++ T H  H    +S D    S+S    H A SS+ST C
Sbjct: 282 LSTTQHGAHIDVGISCDLLDDSASCHIPHVASSSISTSC 320


>10_08_0269 - 16366392-16366403,16366469-16368262
          Length = 601

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 28  ITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 66
           ++ T H  H    +S D    S++    H A SS+ST C
Sbjct: 458 LSTTQHGAHIDVGISCDLLDDSATCHIAHVASSSISTSC 496


>05_02_0037 + 5883285-5884292
          Length = 335

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/26 (46%), Positives = 16/26 (61%)

Query: 42 SLDSPQTSSSTGDNHAAFSSVSTHCK 67
          SL SP +S+S+   HAA S  S  C+
Sbjct: 47 SLSSPSSSTSSRSYHAAMSGKSLSCE 72


>04_03_0133 - 11653859-11653962,11658466-11658979
          Length = 205

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/58 (25%), Positives = 26/58 (44%)

Query: 9  AHDRIINAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 66
          +H+R+  +      A    ++ T H+      +S D    S++    H A SS+ST C
Sbjct: 27 SHERLTISHEKLKEAHDNLLSTTQHEALIDVGISCDLLDDSATCHIAHVASSSISTSC 84


>08_02_1237 +
           25475219-25475916,25476127-25476320,25476407-25477302,
           25477416-25477490,25477582-25477689,25477780-25477897,
           25478007-25478142,25478228-25478372,25478460-25479080,
           25479166-25479597
          Length = 1140

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 17/53 (32%), Positives = 24/53 (45%), Gaps = 8/53 (15%)

Query: 3   PLQFIAAHDRIINAWGHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDN 55
           PL+     +R I      +PA+Q C T T+   H        SP TS+S G +
Sbjct: 553 PLELFKDSERPIENGSPPNPAYQSCYTSTSCSDH--------SPSTSNSDGQD 597


>02_05_1223 +
           35033273-35033353,35033455-35033539,35033613-35033683,
           35034400-35034531,35034654-35034769,35035128-35035251,
           35035349-35035417,35035508-35035628,35035707-35035843
          Length = 311

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 9/24 (37%), Positives = 11/24 (45%)

Query: 1   MTPLQFIAAHDRIINAWGHTSPAW 24
           M P   I   DRI+N W   +  W
Sbjct: 127 MRPATMIGTEDRILNRWAQFAKNW 150


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.319    0.123    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,346,250
Number of Sequences: 37544
Number of extensions: 75694
Number of successful extensions: 202
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 194
Number of HSP's gapped (non-prelim): 9
length of query: 96
length of database: 14,793,348
effective HSP length: 70
effective length of query: 26
effective length of database: 12,165,268
effective search space: 316296968
effective search space used: 316296968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)