GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001517-TA|BGIBMGA001517-PA|undefined
         (96 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical pr...    29   0.49 
Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical pr...    28   0.86 
U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical pr...    26   3.5  
AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore...    26   3.5  
AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore...    26   3.5  
Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical pr...    25   6.1  
AF039050-4|AAC47937.1|  499|Caenorhabditis elegans Cytochrome p4...    25   6.1  
AF025453-8|AAK31403.1|  318|Caenorhabditis elegans Hypothetical ...    25   8.0  

>Z47069-1|CAA87338.1|  964|Caenorhabditis elegans Hypothetical
           protein F36G3.1 protein.
          Length = 964

 Score = 29.1 bits (62), Expect = 0.49
 Identities = 12/22 (54%), Positives = 15/22 (68%)

Query: 44  DSPQTSSSTGDNHAAFSSVSTH 65
           D  +TSS+T DN+  FS  STH
Sbjct: 484 DEVETSSTTADNNIPFSDCSTH 505


>Z68003-2|CAA91976.2|  560|Caenorhabditis elegans Hypothetical
           protein E02H4.2 protein.
          Length = 560

 Score = 28.3 bits (60), Expect = 0.86
 Identities = 13/49 (26%), Positives = 26/49 (53%)

Query: 21  SPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLR 69
           +P+  +  T + +  +   + SL  PQT  + GD +  ++S  T+C+ R
Sbjct: 324 APSLSIQSTDSFNSAYEDAEESLIQPQTKKNEGDAYGKYNSTLTNCQTR 372


>U64835-8|AAY86281.1|  166|Caenorhabditis elegans Hypothetical
           protein T09D3.8 protein.
          Length = 166

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 17/58 (29%), Positives = 25/58 (43%), Gaps = 6/58 (10%)

Query: 15  NAWGHTSPAWQLCITW-----TTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCK 67
           N W  T      C+ W     T+ D  +T  L  DSP  ++  GD+ A  S  +  C+
Sbjct: 85  NEWLQTDSTSDGCVQWNVYCNTSPDCTSTI-LYADSPSGTTEIGDDLATSSEATLTCQ 141


>AC024214-18|AAF36083.1|  211|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform b protein.
          Length = 211

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 8   AAHDRIINAWGHTSPAWQLCITWTTHDTHAT 38
           A++D+ +  W      WQ    W  H+   T
Sbjct: 78  ASYDKKVIIWNEQQGRWQKAYEWAAHEASTT 108


>AC024214-17|AAF36082.1|  313|Caenorhabditis elegans Nuclear pore
           complex protein protein20, isoform a protein.
          Length = 313

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 8/31 (25%), Positives = 13/31 (41%)

Query: 8   AAHDRIINAWGHTSPAWQLCITWTTHDTHAT 38
           A++D+ +  W      WQ    W  H+   T
Sbjct: 78  ASYDKKVIIWNEQQGRWQKAYEWAAHEASTT 108


>Z68493-8|CAA92795.1|  336|Caenorhabditis elegans Hypothetical
           protein C33A12.11 protein.
          Length = 336

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 1/40 (2%)

Query: 25  QLCI-TWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVS 63
           Q C+ TW  + TH  F+ S +S  T  ST        +VS
Sbjct: 297 QACVVTWLFYLTHPAFRNSTNSVDTVFSTSSQRRTQRTVS 336


>AF039050-4|AAC47937.1|  499|Caenorhabditis elegans Cytochrome
          p450 family protein 34A7 protein.
          Length = 499

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 5  QFIAAHDRIINAWGHTSPAWQLCITWTTHDTH 36
          QF   + ++   W    PA Q+C     H+TH
Sbjct: 57 QFRKQYGKVFTVWMGPIPAVQICDFDVAHETH 88


>AF025453-8|AAK31403.1|  318|Caenorhabditis elegans Hypothetical
           protein C08F1.3 protein.
          Length = 318

 Score = 25.0 bits (52), Expect = 8.0
 Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 5/61 (8%)

Query: 6   FIAAHDRIINA-W---GHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSS 61
           +I  H R +NA W   G ++  W       T+ +H  FKLS+D+        D H A + 
Sbjct: 80  YIYIHSRTVNAKWSLPGMSTRQWIDHFMELTN-SHRIFKLSIDAKNPEIDMKDLHRALTG 138

Query: 62  V 62
           +
Sbjct: 139 L 139


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.319    0.123    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,401
Number of Sequences: 27539
Number of extensions: 59076
Number of successful extensions: 111
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 8
length of query: 96
length of database: 12,573,161
effective HSP length: 70
effective length of query: 26
effective length of database: 10,645,431
effective search space: 276781206
effective search space used: 276781206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)