GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001517-TA|BGIBMGA001517-PA|undefined
         (96 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g47910.1 68416.m05224 expressed protein low similarity to non...    27   2.6  
At1g74530.2 68414.m08635 expressed protein                             26   3.4  
At1g74530.1 68414.m08634 expressed protein                             26   3.4  
At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containi...    25   6.0  
At4g34300.1 68417.m04875 glycine-rich protein similar to auxin r...    25   6.0  
At1g67120.1 68414.m07636 midasin-related similar to Midasin (MID...    25   6.0  
At3g53700.1 68416.m05931 pentatricopeptide (PPR) repeat-containi...    25   7.9  
At1g75800.1 68414.m08805 pathogenesis-related thaumatin family p...    25   7.9  

>At3g47910.1 68416.m05224 expressed protein low similarity to
           nonmuscle myosin heavy chain (NMHC) [Homo sapiens]
           GI:189036; contains Pfam profiles PF04780: Protein of
           unknown function (DUF629), PF04781: Protein of unknown
           function (DUF627)
          Length = 1290

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 10/32 (31%), Positives = 16/32 (50%)

Query: 15  NAWGHTSPAWQLCITWTTHDTHATFKLSLDSP 46
           +AW  T+P    C  W  +++    KLS+  P
Sbjct: 478 DAWNDTTPDGDTCNGWNENESEEEVKLSIAFP 509


>At1g74530.2 68414.m08635 expressed protein 
          Length = 262

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 21 SPAWQLCIT-WTTHDT--HATFKLSL-DSPQTSSSTGDNHAAFSSVST 64
          +P W+  +  WT   T  ++ F++ + +SP TSS + D+  +++  ST
Sbjct: 11 APNWRTAVLFWTISLTIFYSLFQMGIRNSPSTSSPSSDSFVSYAEQST 58


>At1g74530.1 68414.m08634 expressed protein 
          Length = 318

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/48 (29%), Positives = 28/48 (58%), Gaps = 4/48 (8%)

Query: 21 SPAWQLCIT-WTTHDT--HATFKLSL-DSPQTSSSTGDNHAAFSSVST 64
          +P W+  +  WT   T  ++ F++ + +SP TSS + D+  +++  ST
Sbjct: 11 APNWRTAVLFWTISLTIFYSLFQMGIRNSPSTSSPSSDSFVSYAEQST 58


>At5g52850.1 68418.m06560 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 893

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/44 (34%), Positives = 18/44 (40%)

Query: 23  AWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHC 66
           AW + I+  T        LSL     +S T  N   FSSV   C
Sbjct: 91  AWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVVRSC 134


>At4g34300.1 68417.m04875 glycine-rich protein similar to auxin
           response factor 30 (GI:20145855) {Arabidopsis thaliana}
          Length = 313

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 6/51 (11%)

Query: 18  GHTSPAWQLCITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKL 68
           GH+S +     T +TH+ H++          SSSTG  H   SS S H  +
Sbjct: 99  GHSSGSNHSSGTGSTHNGHSS------GSNHSSSTGSTHNNHSSGSNHSSI 143


>At1g67120.1 68414.m07636 midasin-related similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q12019)
           [Saccharomyces cerevisiae]; similar to Midasin
           (MIDAS-containing protein) (Swiss-Prot:Q9NU22) [Homo
           sapiens]; contains Prosite PS00017: ATP/GTP-binding site
           motif A (P-loop)
          Length = 5336

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 15/30 (50%), Positives = 18/30 (60%), Gaps = 1/30 (3%)

Query: 34  DTHATFKLSLDSPQTSSSTGDNHAAFSSVS 63
           +T  T   +L  PQ SSST +N A FSS S
Sbjct: 525 ETFETINSAL-RPQFSSSTTENSATFSSPS 553


>At3g53700.1 68416.m05931 pentatricopeptide (PPR)
          repeat-containing protein low similarity to fertility
          restorer [Petunia x hybrida] GI:22128587; contains Pfam
          profile PF01535: PPR repeat
          Length = 754

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)

Query: 35 THATFKLSLDSPQTSSSTGDNHAAFSSVSTHCKLRAALATR 75
          TH +F L+L  P ++ S    H+A  S ST  KL  +L ++
Sbjct: 21 THHSFSLNLTPPSSTISFASPHSAALS-STDVKLLDSLRSQ 60


>At1g75800.1 68414.m08805 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam
           profile: PF00314 Thaumatin family
          Length = 330

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 20  TSPAWQLCITWTTHDTHATFKLSLDSPQTSSST 52
           T+PA     TW+  DT   ++ +LD  + S ST
Sbjct: 275 TTPAGDSSTTWSPVDTSMIYEGALDQNKGSPST 307


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.319    0.123    0.400 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,816,236
Number of Sequences: 28952
Number of extensions: 58108
Number of successful extensions: 153
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 147
Number of HSP's gapped (non-prelim): 9
length of query: 96
length of database: 12,070,560
effective HSP length: 69
effective length of query: 27
effective length of database: 10,072,872
effective search space: 271967544
effective search space used: 271967544
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)