Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001516-TA|BGIBMGA001516-PA|undefined
         (63 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)              27   2.9  
SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)                      27   2.9  
SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)                  26   5.0  
SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)                   25   6.6  
SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)                   25   8.7  

>SB_39858| Best HMM Match : Spectrin (HMM E-Value=2.6e-05)
          Length = 3397

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 4    DSDDTALAERVRGFKSDPEKVREATEFVDQ 33
            D D+    ER+R  K DPE+  E  EFVD+
Sbjct: 1769 DGDEFVDEERIRKDKEDPEE--EFEEFVDE 1796


>SB_3573| Best HMM Match : DUF1168 (HMM E-Value=1)
          Length = 782

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 2/30 (6%)

Query: 4   DSDDTALAERVRGFKSDPEKVREATEFVDQ 33
           D D+    ER+R  K DPE+  E  EFVD+
Sbjct: 300 DGDEFVDEERIRKDKEDPEE--EFEEFVDE 327


>SB_33687| Best HMM Match : Filament (HMM E-Value=0.1)
          Length = 700

 Score = 25.8 bits (54), Expect = 5.0
 Identities = 11/35 (31%), Positives = 22/35 (62%)

Query: 1   MRQDSDDTALAERVRGFKSDPEKVREATEFVDQLI 35
           + Q+   TAL +++   K + E+VRE   F+D+++
Sbjct: 234 LSQEKVITALRKQMEEEKQEFERVREEVRFMDEVV 268


>SB_11383| Best HMM Match : rve (HMM E-Value=2.3e-18)
          Length = 1003

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)

Query: 9   ALAERVRGFKSDPEKVREATE 29
           A+ +R  G K DPEKVR   E
Sbjct: 374 AVLKRSHGLKPDPEKVRAINE 394


>SB_43601| Best HMM Match : ADK (HMM E-Value=2.3e-05)
          Length = 712

 Score = 25.0 bits (52), Expect = 8.7
 Identities = 11/19 (57%), Positives = 12/19 (63%)

Query: 4   DSDDTALAERVRGFKSDPE 22
           D  DT L ERV G + DPE
Sbjct: 193 DCPDTVLIERVMGKRVDPE 211


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.312    0.129    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,523,889
Number of Sequences: 59808
Number of extensions: 29190
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 82
Number of HSP's gapped (non-prelim): 5
length of query: 63
length of database: 16,821,457
effective HSP length: 42
effective length of query: 21
effective length of database: 14,309,521
effective search space: 300499941
effective search space used: 300499941
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)