GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001516-TA|BGIBMGA001516-PA|undefined
         (63 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse ...    21   0.72 
AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450 ...    18   8.9  

>U09586-2|AAC47271.1|  712|Tribolium castaneum protease, reverse
           transcriptase andRNase H protein.
          Length = 712

 Score = 21.4 bits (43), Expect = 0.72
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 14  VRGFKSDPEKVREATEF 30
           + G K+DPEK+     F
Sbjct: 510 INGIKADPEKISAIRNF 526


>AF251548-1|AAF70178.1|  491|Tribolium castaneum cytochrome P450
          monooxigenase CYP4Q4 protein.
          Length = 491

 Score = 17.8 bits (34), Expect = 8.9
 Identities = 8/12 (66%), Positives = 8/12 (66%)

Query: 10 LAERVRGFKSDP 21
          LAER RG K  P
Sbjct: 57 LAERERGLKYYP 68


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.312    0.129    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8908
Number of Sequences: 317
Number of extensions: 169
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 63
length of database: 114,650
effective HSP length: 43
effective length of query: 20
effective length of database: 101,019
effective search space:  2020380
effective search space used:  2020380
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 34 (18.2 bits)
S2: 34 (17.8 bits)