GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001516-TA|BGIBMGA001516-PA|undefined
         (63 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1339 + 32760424-32760584,32762428-32764462                       27   2.5  

>04_04_1339 + 32760424-32760584,32762428-32764462
          Length = 731

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 10/24 (41%), Positives = 16/24 (66%)

Query: 12  ERVRGFKSDPEKVREATEFVDQLI 35
           E  +   SDPEK+++  EFV +L+
Sbjct: 314 ESGKALVSDPEKIKDPVEFVQRLL 337


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.129    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,359,739
Number of Sequences: 37544
Number of extensions: 26640
Number of successful extensions: 56
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 1
length of query: 63
length of database: 14,793,348
effective HSP length: 43
effective length of query: 20
effective length of database: 13,178,956
effective search space: 263579120
effective search space used: 263579120
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 52 (25.0 bits)