GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001516-TA|BGIBMGA001516-PA|undefined
         (63 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88180-12|AAO21402.1|  476|Caenorhabditis elegans Hypothetical p...    25   5.0  
U88180-11|AAO21401.1|  566|Caenorhabditis elegans Hypothetical p...    25   5.0  
U88180-10|AAO21403.1|  532|Caenorhabditis elegans Hypothetical p...    25   5.0  
U88180-9|AAM22071.1|  517|Caenorhabditis elegans Hypothetical pr...    25   5.0  
U88180-8|AAB42296.1|  607|Caenorhabditis elegans Hypothetical pr...    25   5.0  

>U88180-12|AAO21402.1|  476|Caenorhabditis elegans Hypothetical
           protein T27A3.1d protein.
          Length = 476

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 3   QDSDDTALAERVRGFKSDPEKVREATEFVDQ 33
           + + D AL ER++  KS+ E++R+  + + Q
Sbjct: 99  RSNSDEALRERLKSTKSENERLRQECDLLRQ 129


>U88180-11|AAO21401.1|  566|Caenorhabditis elegans Hypothetical
           protein T27A3.1c protein.
          Length = 566

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 3   QDSDDTALAERVRGFKSDPEKVREATEFVDQ 33
           + + D AL ER++  KS+ E++R+  + + Q
Sbjct: 99  RSNSDEALRERLKSTKSENERLRQECDLLRQ 129


>U88180-10|AAO21403.1|  532|Caenorhabditis elegans Hypothetical
           protein T27A3.1e protein.
          Length = 532

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 3   QDSDDTALAERVRGFKSDPEKVREATEFVDQ 33
           + + D AL ER++  KS+ E++R+  + + Q
Sbjct: 140 RSNSDEALRERLKSTKSENERLRQECDLLRQ 170


>U88180-9|AAM22071.1|  517|Caenorhabditis elegans Hypothetical
           protein T27A3.1b protein.
          Length = 517

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 3   QDSDDTALAERVRGFKSDPEKVREATEFVDQ 33
           + + D AL ER++  KS+ E++R+  + + Q
Sbjct: 140 RSNSDEALRERLKSTKSENERLRQECDLLRQ 170


>U88180-8|AAB42296.1|  607|Caenorhabditis elegans Hypothetical
           protein T27A3.1a protein.
          Length = 607

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)

Query: 3   QDSDDTALAERVRGFKSDPEKVREATEFVDQ 33
           + + D AL ER++  KS+ E++R+  + + Q
Sbjct: 140 RSNSDEALRERLKSTKSENERLRQECDLLRQ 170


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.129    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,115,423
Number of Sequences: 27539
Number of extensions: 23403
Number of successful extensions: 60
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 55
Number of HSP's gapped (non-prelim): 5
length of query: 63
length of database: 12,573,161
effective HSP length: 43
effective length of query: 20
effective length of database: 11,388,984
effective search space: 227779680
effective search space used: 227779680
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 51 (24.6 bits)