GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001516-TA|BGIBMGA001516-PA|undefined
         (63 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           21   1.2  
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           21   1.2  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 1  MRQDSDDTALAERVRGFKSDPEKVREATEFVD 32
          +R+D   + +A     FK  PE  R  T F+D
Sbjct: 39 VRKDEVASGIAVMTAFFKKYPEYQRYFTAFMD 70


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 21.0 bits (42), Expect = 1.2
 Identities = 11/32 (34%), Positives = 16/32 (50%)

Query: 1  MRQDSDDTALAERVRGFKSDPEKVREATEFVD 32
          +R+D   + +A     FK  PE  R  T F+D
Sbjct: 39 VRKDEVASGIAVMTAFFKKYPEYQRYFTAFMD 70


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.312    0.129    0.347 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,159
Number of Sequences: 429
Number of extensions: 187
Number of successful extensions: 2
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2
length of query: 63
length of database: 140,377
effective HSP length: 43
effective length of query: 20
effective length of database: 121,930
effective search space:  2438600
effective search space used:  2438600
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.7 bits)
S2: 35 (18.2 bits)