Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001515-TA|BGIBMGA001515-PA|IPR009947|NADH:ubiquinone
oxidoreductase subunit B14.5a
         (102 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax pr...    24   0.36 
AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax pr...    24   0.36 
AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax pr...    24   0.36 
AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax pr...    24   0.36 
AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax pr...    24   0.36 
AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.           24   0.36 
AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax pr...    24   0.36 
AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduce...    24   0.36 
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   1.5  
AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless pr...    22   1.5  
AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.     21   2.5  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    20   5.9  
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    20   5.9  
AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein p...    20   5.9  
AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A prot...    20   5.9  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    20   5.9  
AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A prot...    20   5.9  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    20   5.9  

>AY055847-1|AAL23667.2|  312|Tribolium castaneum cephalothorax
          protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 60 YYKRSAINSVFPPIV-APVAEGPPMNQDPTKKAQPG-GIKP 98
          YY  +A NS +PP   +P    P   Q P     PG G++P
Sbjct: 29 YYNPNA-NSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQP 68


>AY055846-1|AAL26542.2|  312|Tribolium castaneum cephalothorax
          protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 60 YYKRSAINSVFPPIV-APVAEGPPMNQDPTKKAQPG-GIKP 98
          YY  +A NS +PP   +P    P   Q P     PG G++P
Sbjct: 29 YYNPNA-NSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQP 68


>AY055845-1|AAL23670.2|  230|Tribolium castaneum cephalothorax
          protein.
          Length = 230

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 60 YYKRSAINSVFPPIV-APVAEGPPMNQDPTKKAQPG-GIKP 98
          YY  +A NS +PP   +P    P   Q P     PG G++P
Sbjct: 29 YYNPNA-NSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQP 68


>AF426396-1|AAL27023.2|  312|Tribolium castaneum cephalothorax
          protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 60 YYKRSAINSVFPPIV-APVAEGPPMNQDPTKKAQPG-GIKP 98
          YY  +A NS +PP   +P    P   Q P     PG G++P
Sbjct: 29 YYNPNA-NSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQP 68


>AF426395-1|AAL27022.2|  297|Tribolium castaneum cephalothorax
          protein.
          Length = 297

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 60 YYKRSAINSVFPPIV-APVAEGPPMNQDPTKKAQPG-GIKP 98
          YY  +A NS +PP   +P    P   Q P     PG G++P
Sbjct: 29 YYNPNA-NSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQP 68


>AF321227-2|AAK16422.1|  312|Tribolium castaneum Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 60 YYKRSAINSVFPPIV-APVAEGPPMNQDPTKKAQPG-GIKP 98
          YY  +A NS +PP   +P    P   Q P     PG G++P
Sbjct: 29 YYNPNA-NSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQP 68


>AF261823-1|AAG13010.1|  157|Tribolium castaneum cephalothorax
          protein.
          Length = 157

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 60 YYKRSAINSVFPPIV-APVAEGPPMNQDPTKKAQPG-GIKP 98
          YY  +A NS +PP   +P    P   Q P     PG G++P
Sbjct: 29 YYNPNA-NSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQP 68


>AF227628-1|AAF42868.1|  312|Tribolium castaneum sex combs reduced
          Scr protein.
          Length = 312

 Score = 23.8 bits (49), Expect = 0.36
 Identities = 15/41 (36%), Positives = 20/41 (48%), Gaps = 3/41 (7%)

Query: 60 YYKRSAINSVFPPIV-APVAEGPPMNQDPTKKAQPG-GIKP 98
          YY  +A NS +PP   +P    P   Q P     PG G++P
Sbjct: 29 YYNPNA-NSTYPPACYSPPQVAPQYPQHPYAAPAPGHGLQP 68


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 76  PVAEGPPMNQDPTKKAQPGG 95
           P  + PP+ Q P +  QP G
Sbjct: 203 PPHQQPPIQQQPNQGQQPPG 222


>AF228509-1|AAF69136.1|  325|Tribolium castaneum prothoraxless
           protein.
          Length = 325

 Score = 21.8 bits (44), Expect = 1.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)

Query: 76  PVAEGPPMNQDPTKKAQPGG 95
           P  + PP+ Q P +  QP G
Sbjct: 205 PPHQQPPIQQQPNQGQQPPG 224


>AJ307577-1|CAC84070.1|  301|Tribolium castaneum dachshund protein.
          Length = 301

 Score = 21.0 bits (42), Expect = 2.5
 Identities = 12/40 (30%), Positives = 15/40 (37%)

Query: 37  MSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAP 76
           M    +P P  P G   Q +  Y    SA+ S   P   P
Sbjct: 246 MDEGDLPLPAAPGGDSQQAALNYSTLASAVASANGPSQDP 285


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 40  RSVPTPEIPRGPDNQY 55
           R+VP P +P+ P  ++
Sbjct: 204 RNVPKPTVPKIPPAEF 219


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
          protein protein.
          Length = 1156

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)

Query: 38 SPRSVPTPEIPR 49
          +P  VPTP  PR
Sbjct: 56 TPGDVPTPSSPR 67


>AF230312-1|AAF64146.1|  253|Tribolium castaneum labial protein
           protein.
          Length = 253

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 6/16 (37%), Positives = 11/16 (68%)

Query: 40  RSVPTPEIPRGPDNQY 55
           R+VP P +P+ P  ++
Sbjct: 204 RNVPKPTVPKIPPAEF 219


>AF017415-2|AAB70263.1|  284|Tribolium castaneum abdominal-A
           protein.
          Length = 284

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 38  SPRSVPTPEIPRGP 51
           +P   P P+IPR P
Sbjct: 121 APGGQPIPDIPRYP 134


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 38  SPRSVPTPEIPRGP 51
           +P   P P+IPR P
Sbjct: 180 APGGQPIPDIPRYP 193


>AF017414-2|AAB70261.1|  150|Tribolium castaneum abdominal-A
           protein.
          Length = 150

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 38  SPRSVPTPEIPRGP 51
           +P   P P+IPR P
Sbjct: 121 APGGQPIPDIPRYP 134


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 19.8 bits (39), Expect = 5.9
 Identities = 7/14 (50%), Positives = 9/14 (64%)

Query: 38  SPRSVPTPEIPRGP 51
           +P   P P+IPR P
Sbjct: 180 APGGQPIPDIPRYP 193


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.139    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,422
Number of Sequences: 317
Number of extensions: 1350
Number of successful extensions: 18
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of query: 102
length of database: 114,650
effective HSP length: 48
effective length of query: 54
effective length of database: 99,434
effective search space:  5369436
effective search space used:  5369436
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.2 bits)
S2: 38 (19.4 bits)