Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001515-TA|BGIBMGA001515-PA|IPR009947|NADH:ubiquinone
oxidoreductase subunit B14.5a
(102 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 28 0.25
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo... 26 1.3
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit... 25 1.8
SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein Sad1|S... 25 3.1
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 24 4.0
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 24 4.0
SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr 3... 24 4.0
SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces... 24 4.0
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p... 24 5.4
SPAC3G9.14 |sak1||transcriptional repressor Sak1|Schizosaccharom... 23 7.1
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 28.3 bits (60), Expect = 0.25
Identities = 9/21 (42%), Positives = 16/21 (76%)
Query: 34 PPLMSPRSVPTPEIPRGPDNQ 54
P ++P+ P+PE+P+ PDN+
Sbjct: 236 PSNVTPKKKPSPEVPKLPDNR 256
>SPAC9E9.10c |cbh1|cbh|centromere binding protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 514
Score = 25.8 bits (54), Expect = 1.3
Identities = 11/44 (25%), Positives = 24/44 (54%)
Query: 41 SVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMN 84
S+P P+ G +++ +++Y ++SA+N I V P++
Sbjct: 120 SLPLPDFSNGWLDKFRRRHYIQQSAVNQALESIKFEVFREYPVH 163
>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 409
Score = 25.4 bits (53), Expect = 1.8
Identities = 10/32 (31%), Positives = 17/32 (53%)
Query: 61 YKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQ 92
+ S + F PI+AP G P ++ K+A+
Sbjct: 99 FTNSELPGAFRPIIAPRVFGAPYDEQAAKEAE 130
>SPBC12D12.01 |sad1|SPBC16H5.01c|spindle pole body protein
Sad1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 514
Score = 24.6 bits (51), Expect = 3.1
Identities = 14/43 (32%), Positives = 19/43 (44%)
Query: 58 QYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQPGGIKPDT 100
Q +Y RS + P +PV PP + D +P IK T
Sbjct: 192 QEFYSRSFSSDNSQPSNSPVPNIPPASNDTKTSLKPDIIKDFT 234
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 24.2 bits (50), Expect = 4.0
Identities = 14/44 (31%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 55 YSKQYYYKRSAINSVFPPIVAP----VAEGPPMNQDPTKKAQPG 94
YSK Y A + VFP ++A + GP ++ P+ A G
Sbjct: 16 YSKLGYAGNDAPSYVFPTVIATRSAGASSGPAVSSKPSYMASKG 59
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 24.2 bits (50), Expect = 4.0
Identities = 13/57 (22%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 34 PPLMSPRSVPTPEIPRGPD--NQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPT 88
P + P P +P D N S+++ ++ S + FP + + P++ +PT
Sbjct: 277 PVTIKPSIYTEPSLPHHIDWNNGCSEEFDFEPSREDEDFPDLTSDSTGQDPLSSEPT 333
>SPCC16A11.03c |||DUF2009 protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 466
Score = 24.2 bits (50), Expect = 4.0
Identities = 9/19 (47%), Positives = 13/19 (68%)
Query: 15 LKIFRDILLGRKHNLHGRF 33
+K RD+L+GR H + RF
Sbjct: 78 IKAGRDLLIGRDHKSNARF 96
>SPAC16.05c |sfp1||transcription factor Sfp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 442
Score = 24.2 bits (50), Expect = 4.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 27 HNLHGRFPPLMSPRSVPTP 45
H LHG P+ +P P P
Sbjct: 370 HKLHGHCSPITTPTPAPIP 388
>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 23.8 bits (49), Expect = 5.4
Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 12/56 (21%)
Query: 26 KHNLHGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGP 81
KHN+ PP SP S D+ YS Q +INSV P + + E P
Sbjct: 276 KHNVETTSPPSSSPNS----------DDAYSPQVDSYSPSINSV--PYTSNIVENP 319
>SPAC3G9.14 |sak1||transcriptional repressor
Sak1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 766
Score = 23.4 bits (48), Expect = 7.1
Identities = 10/23 (43%), Positives = 12/23 (52%)
Query: 27 HNLHGRFPPLMSPRSVPTPEIPR 49
H PP +S SVP+P PR
Sbjct: 279 HLSQSNVPPQLSHSSVPSPAPPR 301
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.317 0.139 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 560,033
Number of Sequences: 5004
Number of extensions: 23235
Number of successful extensions: 51
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 42
Number of HSP's gapped (non-prelim): 12
length of query: 102
length of database: 2,362,478
effective HSP length: 63
effective length of query: 39
effective length of database: 2,047,226
effective search space: 79841814
effective search space used: 79841814
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 47 (23.0 bits)
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