Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001515-TA|BGIBMGA001515-PA|IPR009947|NADH:ubiquinone
oxidoreductase subunit B14.5a
(102 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_46689| Best HMM Match : HGD-D (HMM E-Value=3.9) 30 0.30
SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 0.53
SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 1.6
SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.1
SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_21820| Best HMM Match : DUF622 (HMM E-Value=2.7) 27 2.8
SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 2.8
SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 3.7
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37) 27 3.7
SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2) 26 4.9
SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 4.9
SB_59029| Best HMM Match : Pkinase (HMM E-Value=0) 26 6.5
SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 6.5
SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27) 26 6.5
SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3) 26 6.5
SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42) 25 8.6
SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0) 25 8.6
SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27) 25 8.6
SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14) 25 8.6
SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.) 25 8.6
>SB_46689| Best HMM Match : HGD-D (HMM E-Value=3.9)
Length = 420
Score = 30.3 bits (65), Expect = 0.30
Identities = 25/71 (35%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 11 ISKGLKIFRDILLGRKHNLHGRFPPLMSPRSVPTPEIPRG--PDNQYSKQYYYKRSAINS 68
+ LK RD + L RFPP S T +PR P K+YY A NS
Sbjct: 52 VGSSLKGARDYDEDTQSVLSIRFPPA----STVTLGLPRAVLPSESQEKRYY--NLAENS 105
Query: 69 VFPPIVAPVAE 79
+ P +VAP++E
Sbjct: 106 ISPSMVAPLSE 116
>SB_2840| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2248
Score = 29.5 bits (63), Expect = 0.53
Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 34 PPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPT 88
PP+ S R P P P GP ++S A SV PP+ AP + PPM P+
Sbjct: 2141 PPMGSSRYGPPP--PMGPA-RHSPSGPSPLGAPPSVPPPMGAPPSGPPPMGAPPS 2192
>SB_32383| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1850
Score = 27.9 bits (59), Expect = 1.6
Identities = 16/59 (27%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 38 SPRSVPTPEIP-RGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQPGG 95
+P + P P + P N + Y ++ N+ P+ G P +PT+ AQP G
Sbjct: 1368 NPTAAPATAYPAQAPANPTAGTAYPTQAPFNTTAAPVYQTA--GQPAQSNPTQSAQPMG 1424
>SB_13398| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2149
Score = 27.9 bits (59), Expect = 1.6
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 5/69 (7%)
Query: 32 RFPPLMSPRSV--PTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTK 89
R PP R+V P PE+P P +++Q +R +S P V P + P + P K
Sbjct: 1473 RSPPKPVNRAVDSPKPEVPVSPREFFARQDSAQRIGQSSSPPKPVKPSTK-PVVPVKPVK 1531
Query: 90 KAQPGGIKP 98
P IKP
Sbjct: 1532 PPSP--IKP 1538
>SB_36971| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1870
Score = 27.5 bits (58), Expect = 2.1
Identities = 14/41 (34%), Positives = 18/41 (43%)
Query: 35 PLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVA 75
P +P V TP P P+ QY N+VFP +A
Sbjct: 1585 PPQTPPPVNTPPRPETPEPQYRGNIDTSTVTKNTVFPSFIA 1625
>SB_46179| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 4856
Score = 27.1 bits (57), Expect = 2.8
Identities = 9/19 (47%), Positives = 12/19 (63%)
Query: 33 FPPLMSPRSVPTPEIPRGP 51
+PP SP++ P P IP P
Sbjct: 658 YPPKTSPKTTPKPHIPPAP 676
>SB_21820| Best HMM Match : DUF622 (HMM E-Value=2.7)
Length = 472
Score = 27.1 bits (57), Expect = 2.8
Identities = 12/37 (32%), Positives = 16/37 (43%)
Query: 27 HNLHGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKR 63
+ +H F PL SP + P PD + YY R
Sbjct: 284 NTMHATFSPLSSPLNTPFILSSSQPDTTSQRNTYYSR 320
>SB_614| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 723
Score = 27.1 bits (57), Expect = 2.8
Identities = 14/49 (28%), Positives = 22/49 (44%)
Query: 38 SPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQD 86
+P PE P P+ Q + ++ NSVF P+V P + Q+
Sbjct: 341 TPEEPVKPEEPVKPEEQEEPEELEEQGDSNSVFVPMVDPTEQDCRQEQE 389
>SB_38342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 86
Score = 26.6 bits (56), Expect = 3.7
Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 6/62 (9%)
Query: 39 PRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQPG-GIK 97
P P P+ GP Q+ Q +Y + +P AP+++G DP + PG G
Sbjct: 17 PAYSPYPQ--SGPVPQHPPQQFYPTQQPPAQYPQYAAPISQG---TFDPGARFGPGTGAS 71
Query: 98 PD 99
P+
Sbjct: 72 PN 73
>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
Length = 1481
Score = 26.6 bits (56), Expect = 3.7
Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 1/68 (1%)
Query: 5 KWDFRDISKGLKIFRDILLGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRS 64
K DF LK+F +I + R + L P + P+ D+ S + KRS
Sbjct: 486 KEDFDKWMSVLKVFTEIRVERPIDTSVD-ESLSHPNVMTRPKSNHSKDDPASVNTFAKRS 544
Query: 65 AINSVFPP 72
+I FPP
Sbjct: 545 SIRMKFPP 552
>SB_36095| Best HMM Match : DMP1 (HMM E-Value=3.2)
Length = 939
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/59 (30%), Positives = 26/59 (44%), Gaps = 3/59 (5%)
Query: 9 RDISKG-LKIFRDILLGRKHNLHG--RFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRS 64
+D ++G + F L G HG R PPL S + PT R P ++ Y R+
Sbjct: 18 KDTAEGEVNAFNSQLRGFNRKSHGLVRLPPLQSQGNSPTTVEERQPRDETKPLLYQHRN 76
>SB_3122| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 26.2 bits (55), Expect = 4.9
Identities = 18/67 (26%), Positives = 26/67 (38%), Gaps = 3/67 (4%)
Query: 27 HNLHGRFPPLMSPRSVPTPEIPRGP-DNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQ 85
HN H P P+S P P P P Y+K + +++++ P PP
Sbjct: 1007 HNSHAAAPSSPCPKSSPVP--PASPLGTNYAKPQSFNNTSVSNHVNNTKPPGVGNPPSVL 1064
Query: 86 DPTKKAQ 92
KAQ
Sbjct: 1065 PNHVKAQ 1071
>SB_59029| Best HMM Match : Pkinase (HMM E-Value=0)
Length = 1023
Score = 25.8 bits (54), Expect = 6.5
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 38 SPRSVPTPEIPRGPDNQYSKQYYYKR 63
SP+ P P++P+ DN ++Y+ R
Sbjct: 411 SPKESPLPDVPKVIDNGNGRRYFRGR 436
>SB_12448| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1300
Score = 25.8 bits (54), Expect = 6.5
Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 15 LKIFRDI-LLGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQ 54
LKI I LLG+ FP P+S P P IP Q
Sbjct: 542 LKILNSIVLLGKAATYATEFPAEDPPKSGPVPPIPNPRSTQ 582
>SB_8061| Best HMM Match : Homeobox (HMM E-Value=5.1e-27)
Length = 418
Score = 25.8 bits (54), Expect = 6.5
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
Query: 34 PPLMSPRSVPTPEIPRG--PDNQYS-KQYYYKRSAINSVFPPI 73
PPL +PR+VP P + R P + S + Y +A +PP+
Sbjct: 161 PPLFTPRTVPVPVLVRDGQPCHGASMNNFAYHHAADFLHYPPV 203
>SB_43413| Best HMM Match : Extensin_2 (HMM E-Value=4.3)
Length = 529
Score = 25.8 bits (54), Expect = 6.5
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 34 PPLMSPRSVPTPEIPRGPDN 53
PP SP S PTP +P PD+
Sbjct: 249 PPTPSPYS-PTPAVPTSPDD 267
>SB_52412| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 485
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Query: 34 PPLMSPRSVPTPEIPRGPD 52
PPL++P S E P GPD
Sbjct: 428 PPLLTPLSEDGEEYPSGPD 446
>SB_37008| Best HMM Match : MAM (HMM E-Value=1.3999e-42)
Length = 382
Score = 25.4 bits (53), Expect = 8.6
Identities = 10/22 (45%), Positives = 11/22 (50%)
Query: 34 PPLMSPRSVPTPEIPRGPDNQY 55
P L P + P P IP P N Y
Sbjct: 301 PNLFIPSAPPNPHIPPAPPNPY 322
>SB_20851| Best HMM Match : Cbl_N3 (HMM E-Value=0)
Length = 695
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 32 RFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIV 74
R PP P S P P+ +Y KQ +S + PP V
Sbjct: 381 RIPPPPLPDSESDSSPPAIPERKYKKQITKGKSKAKNPIPPEV 423
>SB_6604| Best HMM Match : Extensin_2 (HMM E-Value=0.27)
Length = 492
Score = 25.4 bits (53), Expect = 8.6
Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 39 PRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQ 92
P SV +P P YS Q + ++ S P+ P PP Q P KK Q
Sbjct: 68 PDSVSNILVPSTP-GIYSNQGLLESPSLFST-SPVTGPAVVLPPGTQPPDKKNQ 119
>SB_5144| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1015
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/47 (36%), Positives = 20/47 (42%), Gaps = 2/47 (4%)
Query: 37 MSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPM 83
M P + P E PR Y Q K+ V I PVAEG P+
Sbjct: 230 MDPEATPVAERPRNV--AYYLQQPLKKWLDQGVEQGIFEPVAEGDPI 274
>SB_51713| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 867
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/43 (32%), Positives = 18/43 (41%)
Query: 32 RFPPLMSPRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIV 74
R PP P S P P+ +Y KQ +S + PP V
Sbjct: 570 RIPPPPLPDSESDSSPPAIPERKYKKQITKGKSKAKNPIPPEV 612
>SB_45669| Best HMM Match : RVT_1 (HMM E-Value=0.14)
Length = 682
Score = 25.4 bits (53), Expect = 8.6
Identities = 25/93 (26%), Positives = 34/93 (36%), Gaps = 4/93 (4%)
Query: 3 KPKWDFRDISKGLKIFRDIL--LGRKHNLHGRFPPLMSPRSVPTPEIPRGPDNQYSKQYY 60
K W +I+K + D++ K F M P + P + PR Y Q
Sbjct: 353 KQTWKNEEIAKQFEKVFDVIGCFQGKTGEPIEFKLEMDPEATPVAQRPRNV--AYYLQQP 410
Query: 61 YKRSAINSVFPPIVAPVAEGPPMNQDPTKKAQP 93
K+ V I PV EG P+N QP
Sbjct: 411 LKKWLDQGVEQGIFEPVPEGEPINWCSPLVVQP 443
>SB_29502| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 697
Score = 25.4 bits (53), Expect = 8.6
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 39 PRSVPTPEIPRGPDNQYSKQYYYKRSAINSVFPPIVAPVAEGPPMNQDPTKK 90
P S P P G D S+ ++ R+ I + P+++GP + + PT+K
Sbjct: 288 PESTPAAAKPEGQDPN-SQGPHFARTPIRT------DPISQGPQLARTPTRK 332
>SB_18656| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3292
Score = 25.4 bits (53), Expect = 8.6
Identities = 11/30 (36%), Positives = 18/30 (60%)
Query: 48 PRGPDNQYSKQYYYKRSAINSVFPPIVAPV 77
P G D+Q S +Y S+I S F P+++ +
Sbjct: 2647 PHGVDDQSSLKYVNHPSSILSPFNPVISQI 2676
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.317 0.139 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,248,671
Number of Sequences: 59808
Number of extensions: 188935
Number of successful extensions: 471
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 452
Number of HSP's gapped (non-prelim): 33
length of query: 102
length of database: 16,821,457
effective HSP length: 71
effective length of query: 31
effective length of database: 12,575,089
effective search space: 389827759
effective search space used: 389827759
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 53 (25.4 bits)
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