GeneModel BLAST Result against uniref50

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001514-TA|BGIBMGA001514-PA|undefined
         (77 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q211X0 Cluster: AsmA precursor; n=3; Bradyrhizobiaceae|...    31   3.4  

>UniRef50_Q211X0 Cluster: AsmA precursor; n=3;
           Bradyrhizobiaceae|Rep: AsmA precursor - Rhodopseudomonas
           palustris (strain BisB18)
          Length = 1239

 Score = 31.5 bits (68), Expect = 3.4
 Identities = 19/38 (50%), Positives = 20/38 (52%)

Query: 7   RAQARKRGAADPTLGDGGADLPLRADFTAPPHLTALNS 44
           R  A  RGAA  TL      L  RA FTA P LTA+ S
Sbjct: 625 RGAATDRGAARATLELDAPQLKGRASFTASPLLTAIRS 662


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.322    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,787,821
Number of Sequences: 1657284
Number of extensions: 1855317
Number of successful extensions: 3817
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 3816
Number of HSP's gapped (non-prelim): 1
length of query: 77
length of database: 575,637,011
effective HSP length: 56
effective length of query: 21
effective length of database: 482,829,107
effective search space: 10139411247
effective search space used: 10139411247
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 65 (30.3 bits)