GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001514-TA|BGIBMGA001514-PA|undefined
         (77 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033     28   1.1  
11_01_0800 - 7047425-7048253,7048340-7048927,7049050-7049268,704...    27   1.9  
10_08_0108 + 14860469-14861032                                         27   2.5  
08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378     26   3.3  
06_03_1380 + 29747187-29747267,29747349-29747481,29747758-297477...    26   4.4  
11_06_0611 + 25461469-25461655,25461670-25462238                       25   5.9  
08_01_0779 - 7553278-7553631,7553765-7553977,7554132-7554617,755...    25   5.9  
04_04_0990 - 29955207-29955551,29955639-29955813,29955887-299560...    25   5.9  
04_03_0583 + 17539541-17539978                                         25   5.9  

>02_05_0706 + 31082924-31083010,31084208-31084576,31084645-31089033
          Length = 1614

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 11/25 (44%), Positives = 15/25 (60%)

Query: 14   GAADPTLGDGGADLPLRADFTAPPH 38
            G+ D  + D    LP+R +F APPH
Sbjct: 1550 GSVDVEVKDDRVTLPVRQNFIAPPH 1574


>11_01_0800 -
          7047425-7048253,7048340-7048927,7049050-7049268,
          7049398-7049518,7050593-7050983
          Length = 715

 Score = 27.1 bits (57), Expect = 1.9
 Identities = 13/29 (44%), Positives = 17/29 (58%)

Query: 11 RKRGAADPTLGDGGADLPLRADFTAPPHL 39
          R+RGA+   +  GG  +P RA  TA P L
Sbjct: 4  RRRGASAVAVHGGGGRVPKRARVTAEPSL 32


>10_08_0108 + 14860469-14861032
          Length = 187

 Score = 26.6 bits (56), Expect = 2.5
 Identities = 19/43 (44%), Positives = 21/43 (48%), Gaps = 2/43 (4%)

Query: 3   VDWGRAQA-RKRGAADPTLGDGG-ADLPLRADFTAPPHLTALN 43
           VD G +   R+ G      GDG  A  PL A   APP L ALN
Sbjct: 82  VDEGDSDVDRRTGDEQQPAGDGAVAATPLDAGGNAPPVLPALN 124


>08_02_0509 - 17988458-17988892,17988986-17989147,17989542-17990378
          Length = 477

 Score = 26.2 bits (55), Expect = 3.3
 Identities = 13/31 (41%), Positives = 15/31 (48%)

Query: 11  RKRGAADPTLGDGGADLPLRADFTAPPHLTA 41
           R+R A    L DGGA+ P RA    P    A
Sbjct: 341 RERNARRAALNDGGAEAPARAAAGVPAEADA 371


>06_03_1380 +
           29747187-29747267,29747349-29747481,29747758-29747770,
           29748027-29748118,29749011-29749831,29750375-29750677
          Length = 480

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 15/43 (34%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 3   VDWGRAQARKRGAADPTLGDGGADLPLRADFTAPPHLTALNSV 45
           +DWG     +    D    DG  +L   ADF A P +  LN V
Sbjct: 173 LDWGPHMICRD---DTQFSDGTGNLDTGADFAAAPDIDHLNGV 212


>11_06_0611 + 25461469-25461655,25461670-25462238
          Length = 251

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 12/32 (37%), Positives = 16/32 (50%)

Query: 6   GRAQARKRGAADPTLGDGGADLPLRADFTAPP 37
           GR+ A +  AA P +G GG +    A    PP
Sbjct: 114 GRSAASRATAASPPVGSGGGEGATAAAVGPPP 145


>08_01_0779 -
           7553278-7553631,7553765-7553977,7554132-7554617,
           7554729-7554796,7554918-7555215,7555288-7555364,
           7555703-7555874,7555951-7556021,7557371-7557392
          Length = 586

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 14  GAADPTLGDGGADLPLRADFTAP 36
           GA  P +GDG   LPL   F++P
Sbjct: 138 GAYSPGVGDGQPYLPLHFPFSSP 160


>04_04_0990 -
           29955207-29955551,29955639-29955813,29955887-29956017,
           29956317-29956436,29956908-29956984,29957070-29957316,
           29957413-29957569,29958191-29958309,29958421-29958555,
           29958636-29958921,29959009-29959211,29959732-29959881,
           29960084-29960266,29960931-29961278
          Length = 891

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/44 (31%), Positives = 22/44 (50%)

Query: 2   FVDWGRAQARKRGAADPTLGDGGADLPLRADFTAPPHLTALNSV 45
           FV     +  K  + D TL D G+++PL+A      H   +NS+
Sbjct: 470 FVSGSSDRTIKIWSWDDTLDDVGSEVPLKAKAVVAAHDKDINSL 513


>04_03_0583 + 17539541-17539978
          Length = 145

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 16/38 (42%), Positives = 17/38 (44%)

Query: 6  GRAQARKRGAADPTLGDGGADLPLRADFTAPPHLTALN 43
          G A     GAA    G   A  PL  D  APP +TA N
Sbjct: 61 GAAGPHLSGAAGAAGGSTVAATPLDDDGNAPPAVTARN 98


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.137    0.448 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,194,813
Number of Sequences: 37544
Number of extensions: 59674
Number of successful extensions: 196
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 188
Number of HSP's gapped (non-prelim): 9
length of query: 77
length of database: 14,793,348
effective HSP length: 56
effective length of query: 21
effective length of database: 12,690,884
effective search space: 266508564
effective search space used: 266508564
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)