GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001513-TA|BGIBMGA001513-PA|IPR000209|Peptidase S8 and
S53, subtilisin, kexin, sedolisin, IPR008979|Galactose-binding like,
IPR009020|Proteinase inhibitor, propeptide, IPR009030|Growth factor,
receptor, IPR002884|Proprotein convertase, P
         (1152 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr 1|||...   353   6e-98
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    31   1.2  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    31   1.2  
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce...    29   3.7  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    29   3.7  
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1...    28   8.6  
SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr 1|||...    28   8.6  

>SPAC22E12.09c |krp1|krp|kexin|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 709

 Score =  353 bits (869), Expect = 6e-98
 Identities = 189/486 (38%), Positives = 260/486 (53%), Gaps = 18/486 (3%)

Query: 98  FILNDPKWPHMWYL--NRGGGLDMNVIPAWREGITGRGVVVTILDDGLETDHPDLVANYD 155
           F ++DP +   W++  +   G D+N+   W  G  G  V V  +DDG++  HPDL A Y 
Sbjct: 118 FGISDPLFYGQWHIFNSNNPGHDLNLREVWDAGYFGENVTVAFVDDGIDFKHPDLQAAYT 177

Query: 156 PAASYDVNGLDPDPQPRYDVIDSNRHGTRCAGEVAATANNSLCXXXXXXXXXXXXXXMLD 215
              S+D N    DP P+   +  ++HGTRCAGEVAA A N +C              +L 
Sbjct: 178 SLGSWDFNDNIADPLPK---LSDDQHGTRCAGEVAA-AWNDVCGVGIAPRAKVAGLRILS 233

Query: 216 GDVTDVVEARSLSLNPQHVDIYSASWGPDDDGKTVDGPGLLATRAFIEGVTKGRNGKGSI 275
             +TD VE+ +L+   Q   IYS SWGP DDG+ +D P     RA + GV  GRNG GSI
Sbjct: 234 APITDAVESEALNYGFQTNHIYSCSWGPADDGRAMDAPNTATRRALMNGVLNGRNGLGSI 293

Query: 276 FVWASGNGGKEHDNCNCDGYTNSIWTLSISSATERGDVPWYSEKCSSTLAATYSSGAINE 335
           FV+ASGNGG  HDNCN DGYTNSI++ +I +      +P+YSE C++ L + YSSG  + 
Sbjct: 294 FVFASGNGGHYHDNCNFDGYTNSIFSATIGAVDAEHKIPFYSEVCAAQLVSAYSSG--SH 351

Query: 336 NQVVTTDLHHSCTAGHTGTSASAPLAAGICALALQANRDLTWRDMQHIVVRTARP-ERLS 394
             ++TT+   +CT  H GTSA+APLA+ + ALAL    DL+WRD+QHI V +A P +  S
Sbjct: 352 LSILTTNPEGTCTRSHGGTSAAAPLASAVYALALSIRPDLSWRDIQHITVYSASPFDSPS 411

Query: 395 LSGEWRINGVGRNVSHSFGYGLLDASGMVRLAKTWRTVPPQR---------RCELAAPRP 445
            + EW+    G   SH FG+G LDAS  V +AK W+ V PQ               +   
Sbjct: 412 QNAEWQKTPAGFQFSHHFGFGKLDASKFVEVAKDWQVVNPQTWLIAPEINVNKSFGSVNN 471

Query: 446 HRMIPPRSAIALQLAVSSCPGVNYLEHVQARISLSAARRGDLRITLTSPAGTNVTLLAPR 505
             +    S   +   +        LEHV  R+ +   RRG L I L SP+G    L + R
Sbjct: 472 ETITEMVSEFTVTKDMIEKSNFKRLEHVTVRVCIPFNRRGALEILLESPSGIRSILASER 531

Query: 506 PHDSSHSGFNSWPFMSVHMWGENPLGEWQLEVTNEGRYMGRASLQEWSLTLYGTSTPAAK 565
           P+D +  GF  W FM+V  W E P G W+L V +        + + W L L+G S   + 
Sbjct: 532 PYDENSKGFLDWTFMTVQHWAEPPEGVWKLLVNDRSGGKHEGTFENWQLALWGESENPSN 591

Query: 566 NDPIPF 571
             P+P+
Sbjct: 592 TAPLPY 597


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 18/54 (33%), Positives = 29/54 (53%), Gaps = 1/54 (1%)

Query: 534 QLEVTNEGRYMGRASLQEWSLTLYGTSTPAAKNDPIPFRNPIIRNKGNA-SRPV 586
           +L+   E RY GRA+    + T YG +TP + ++P  F      ++ N+ S PV
Sbjct: 50  ELQRRQEIRYYGRAAETGGTPTYYGYATPTSSSEPSIFSESATPSETNSYSSPV 103


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 19/56 (33%), Positives = 26/56 (46%), Gaps = 10/56 (17%)

Query: 1066 QISDVNWHYRLNVVLSLVLFCICFISLYFIISWTLKWFYGTNNYNSNIAY-NKLSS 1120
            +I D+ WHYR        ++  CF+   F +SW    F G N     + Y NKL S
Sbjct: 1121 KIDDITWHYR--------IYENCFLGSEF-VSWLANTFIGINTREEALKYGNKLLS 1167


>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2310

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 14/35 (40%), Positives = 22/35 (62%)

Query: 863 EQLITSYFTILVCFLKFILIFRTKVFSIEAKLHEI 897
           +QL+T YFT L  FL F LI+  ++F    +L+ +
Sbjct: 441 KQLVTDYFTSLWEFLGFQLIYMGELFEYVPELNSL 475


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 16/47 (34%), Positives = 20/47 (42%), Gaps = 1/47 (2%)

Query: 560  STPAAKNDPIPFRNPIIRNKGNASR-PVVLQAGRKNNRGKIVPVAPT 605
            S PAAK+ P P  NP+   +   +R P      R N      PV  T
Sbjct: 1001 SMPAAKSKPAPMANPVSTAQQTQNRPPAPAMQARPNTTQAAAPVTST 1047


>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 800

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/56 (23%), Positives = 28/56 (50%)

Query: 303 SISSATERGDVPWYSEKCSSTLAATYSSGAINENQVVTTDLHHSCTAGHTGTSASA 358
           +ISS+T     P  +  C+++ +  Y+S  +    + TT+   S +  +T T  ++
Sbjct: 515 TISSSTPVTSTPVTTTNCTTSTSVLYTSTPVTSTPLATTNCTTSTSVPYTSTPVTS 570


>SPAC10F6.03c |||CTP synthase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 14/54 (25%), Positives = 21/54 (38%)

Query: 374 DLTWRDMQHIVVRTARPERLSLSGEWRINGVGRNVSHSFGYGLLDASGMVRLAK 427
           DL W +  H+   T   + LS    W +      +    G+G     GM+  AK
Sbjct: 337 DLQWVEASHLEASTNTSDPLSYHKAWHLVCSANGILVPGGFGSRGVEGMIAAAK 390


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,069,137
Number of Sequences: 5004
Number of extensions: 209508
Number of successful extensions: 496
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 477
Number of HSP's gapped (non-prelim): 17
length of query: 1152
length of database: 2,362,478
effective HSP length: 81
effective length of query: 1071
effective length of database: 1,957,154
effective search space: 2096111934
effective search space used: 2096111934
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)