GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001513-TA|BGIBMGA001513-PA|IPR000209|Peptidase S8 and
S53, subtilisin, kexin, sedolisin, IPR008979|Galactose-binding like,
IPR009020|Proteinase inhibitor, propeptide, IPR009030|Growth factor,
receptor, IPR002884|Proprotein convertase, P
         (1152 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g19660.1 68418.m02339 subtilase family protein contains Pfam ...    33   0.84 
At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to ...    32   1.9  
At3g04070.1 68416.m00430 no apical meristem (NAM) family protein...    30   7.8  
At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel factory-r...    30   7.8  

>At5g19660.1 68418.m02339 subtilase family protein contains Pfam
           profile: PF00082 subtilase family
          Length = 1038

 Score = 33.5 bits (73), Expect = 0.84
 Identities = 55/264 (20%), Positives = 96/264 (36%), Gaps = 34/264 (12%)

Query: 125 WREGITGRGVVVTILDDGLETDHPDLVANYDPAASYDVNGLDPDPQPRYDVIDSNRHGTR 184
           W++G TG  V + I D G+  DHP     +        N  + D      + D+  HGT 
Sbjct: 197 WKKGYTGAKVKMAIFDTGIRADHP-----HFRKIKERTNWTNED-----TLNDNLGHGTF 246

Query: 185 CAGEVAATANNSLCXXXXXXXXXXXXXXMLDGDVTDVVEARSLSLNPQHVDIYSASWGPD 244
            AG +A    N  C                D  V         S     +D ++ +   D
Sbjct: 247 VAGVIA--GRNPECLGFASDTEIYAFRVFTDAQV---------SYTSWFLDAFNYAIATD 295

Query: 245 DD--GKTVDGPGLLATRAFIEGVTKGRNGKGSIFVWASGNGGKEHDNCNCDGYTNSIWTL 302
            D    ++ GP  L    F+E V +       I V A GN G  +   N     + +  +
Sbjct: 296 MDVLNLSIGGPDYL-DLPFVEKVWE-ITASNIIMVSAIGNDGPLYGTLNNPADQSDV--I 351

Query: 303 SISSATERGDVPWYSEKCSSTLAATYSSGAINEN------QVVTTDLHHSCTAGHTGTSA 356
            +        +  +S +  ST    +  G +  +       ++ + +   C +  +GTS 
Sbjct: 352 GVGGIDNDDHIASFSSRGMSTWELPHGYGRVKPDVVAYGRDIMGSKISTGCKS-LSGTSV 410

Query: 357 SAPLAAGICALALQANRDLTWRDM 380
           ++P+ AGI  L +    +   +D+
Sbjct: 411 ASPVVAGIVCLLVSVIPEARRKDL 434


>At3g22780.1 68416.m02872 CXC domain protein (TSO1) identical to CXC
           domain protein TSO1 [Arabidopsis thaliana] GI:7767425
          Length = 695

 Score = 32.3 bits (70), Expect = 1.9
 Identities = 16/37 (43%), Positives = 19/37 (51%)

Query: 713 FYGTETPAQEQDVSPETNSLGENSRVDTKPWTLSEPE 749
           F G+ TP Q QD   ET+   EN  V+  P  L  PE
Sbjct: 342 FSGSTTPIQSQDTVQETSDQAENEPVEEVPKALVFPE 378


>At3g04070.1 68416.m00430 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAM GB:CAA63101 [Petunia x hybrida]
          Length = 359

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 14/48 (29%), Positives = 24/48 (50%)

Query: 388 ARPERLSLSGEWRINGVGRNVSHSFGYGLLDASGMVRLAKTWRTVPPQ 435
           ARP R + SG W+  G  + ++   G G  +  G+ +    +R  PP+
Sbjct: 80  ARPNRAAASGYWKATGTDKLIAVPNGEGFHENIGIKKALVFYRGKPPK 127


>At3g03300.1 68416.m00327 DEAD/DEAH box helicase carpel
           factory-related similar to RNA helicase GB:AAF03534
          Length = 1317

 Score = 30.3 bits (65), Expect = 7.8
 Identities = 12/39 (30%), Positives = 24/39 (61%)

Query: 121 VIPAWREGITGRGVVVTILDDGLETDHPDLVANYDPAAS 159
           ++  +R G+    V  +IL++GL+    +LV  +DPA++
Sbjct: 438 IVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASN 476


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,947,800
Number of Sequences: 28952
Number of extensions: 1147717
Number of successful extensions: 2813
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 2807
Number of HSP's gapped (non-prelim): 6
length of query: 1152
length of database: 12,070,560
effective HSP length: 89
effective length of query: 1063
effective length of database: 9,493,832
effective search space: 10091943416
effective search space used: 10091943416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 65 (30.3 bits)