Silkworm BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001512-TA|BGIBMGA001512-PA|IPR000719|Protein kinase,
IPR008271|Serine/threonine protein kinase, active site,
IPR011009|Protein kinase-like, IPR002290|Serine/threonine protein
kinase
         (472 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    48   2e-07
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    38   1e-04
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                36   7e-04
AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C prot...    36   0.001
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    35   0.002
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    35   0.002
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     23   4.2  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              23   7.3  

>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 48.0 bits (109), Expect = 2e-07
 Identities = 50/209 (23%), Positives = 89/209 (42%), Gaps = 15/209 (7%)

Query: 27  IGCGNFGELRLGKNLYNSDHVAIKMEPMKSKAPQLHLEYRFYKLLGTHAPSTAEGIPEVY 86
           +G G FG + L +   +S       +  K++  +   +            +  + + +++
Sbjct: 373 LGVGGFGRVELVQIAGDSSRSFALKQMKKAQIVETRQQQHIMSEKRIMGEADCDFVVKLF 432

Query: 87  YFGPCGKYNALVMEL-LGPSLEDLFDLCGRRFSLKTVLMIAMQLLYRIEYVHTRHLIYRD 145
                 KY  ++ME  LG  L  +    G  F   T       ++   +Y+H+R++IYRD
Sbjct: 433 KTFKDRKYLYMLMEACLGGELWTVLRDKGH-FDDGTTRFYTACVVEAFDYLHSRNIIYRD 491

Query: 146 VKPENFLIGRTATKKEKIVHIIDFGLAKEYIDLETNKHIPYREHKSLTGTARYMSINTHL 205
           +KPEN L+       +  V ++DFG AK  +D     H   R+  +  GT  Y++    L
Sbjct: 492 LKPENLLL-----DSQGYVKLVDFGFAKR-LD-----H--GRKTWTFCGTPEYVAPEVIL 538

Query: 206 GKEQSRRDDLEALGHMFMYFLRGSLPWQG 234
            K      D  +LG +    L G+ P+ G
Sbjct: 539 NKGHDISADYWSLGVLMFELLTGTPPFTG 567


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 38.3 bits (85), Expect = 1e-04
 Identities = 19/47 (40%), Positives = 28/47 (59%), Gaps = 2/47 (4%)

Query: 128 QLLYRIEYVHTRHLIYRDVKPENFLIGRTATKKEKIVHIIDFGLAKE 174
           Q+L  + + H   +++RD+KPEN L+   A  K   V + DFGLA E
Sbjct: 17  QILESVHHCHHNGVVHRDLKPENLLLASKA--KGAAVKLADFGLAIE 61


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 35.9 bits (79), Expect = 7e-04
 Identities = 52/228 (22%), Positives = 90/228 (39%), Gaps = 26/228 (11%)

Query: 14  VLMVGPNFRVGKKIGCGNFGELRLGKNLYNSDHVAIKMEPMKSKAPQLHLEYRFYKLLGT 73
           +L  G   + G  +G G FG +   K LY  + VA K+   +  +  L+ E     L   
Sbjct: 60  ILKDGFPIKCGTFLGSGGFGIVY--KALYKGEQVAAKIIQTEKYSNMLNSEKHASFL--K 115

Query: 74  HAPSTAEGIPEVYYFGPCGKYNALVMELLGPSLEDLFDLCGRRFSLKTV-LMIAMQLLYR 132
           H+      I +V         + + MEL G +L++  D       +K   + I   +   
Sbjct: 116 HS-----NIVKVLMIEQGASLSLITMELCGTTLQNRLD---EAILIKNERICILKSITCA 167

Query: 133 IEYVHTRHLIYRDVKPENFLIGRTATKKEKIVHIIDFGLAKEYIDLETNKHIPYREHKSL 192
           +++ H   +++ DVKP+N L+ +    K     + DFG +   I           E    
Sbjct: 168 LQFCHNAGIVHADVKPKNILMSKNGQPK-----LTDFG-SSVLIGAP-------NEIDKF 214

Query: 193 TGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKADTL 240
            GT  Y +         +   D+ +LG +    L   LP+ GL + T+
Sbjct: 215 YGTPGYTAPEVIKQNRPTPAADIYSLGIVAWQMLFRKLPFAGLHSHTI 262


>AB013288-1|BAA87894.1|  149|Apis mellifera protein kinase C
           protein.
          Length = 149

 Score = 35.5 bits (78), Expect = 0.001
 Identities = 24/80 (30%), Positives = 41/80 (51%), Gaps = 7/80 (8%)

Query: 98  VMELL-GPSLEDLFDLCGRRFSLKTVLMIAMQLLYRIEYVHTRHLIYRDVKPENFLIGRT 156
           VME + G  L      CG+ F     +  A ++   + ++H R ++YRD+K +N L+   
Sbjct: 63  VMEYVNGGDLMYQIQQCGK-FKEPVAVFYASEIAIGLFFLHGRGIVYRDLKLDNVLL--- 118

Query: 157 ATKKEKIVHIIDFGLAKEYI 176
              ++  + I DFG+ KE I
Sbjct: 119 --DQDGHIKIADFGMCKEGI 136


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 34.7 bits (76), Expect = 0.002
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 113 CGRRFSLKTV--LMIAMQLLYRIEYVHTRHLIYRDVKPENFLI 153
           CG R  L  +  + IA+ +L  I Y+H++ L++RDVK +N L+
Sbjct: 688 CGIRAGLSWLERIQIALDVLEGIRYLHSQGLVHRDVKLKNVLL 730


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 34.7 bits (76), Expect = 0.002
 Identities = 17/43 (39%), Positives = 28/43 (65%), Gaps = 2/43 (4%)

Query: 113 CGRRFSLKTV--LMIAMQLLYRIEYVHTRHLIYRDVKPENFLI 153
           CG R  L  +  + IA+ +L  I Y+H++ L++RDVK +N L+
Sbjct: 726 CGIRAGLSWLERIQIALDVLEGIRYLHSQGLVHRDVKLKNVLL 768


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 19/84 (22%), Positives = 35/84 (41%), Gaps = 4/84 (4%)

Query: 311 GKTMSTPVVSGSTGQEIVISPNRDSHQPFNK-MGTLAAKEFGTSGTTNT---GNWPHSGK 366
           GK  S P+V+ S    I I   +  +Q  NK  G   + +  T G  N     +   + +
Sbjct: 480 GKDYSLPMVNHSKSSRINIERMKQVYQQLNKYRGNGVSLKGETVGLLNALPPSSMKETEE 539

Query: 367 ATPLTTGHLTPADRHGSVQVVSST 390
               T   L+P++    ++++  T
Sbjct: 540 EKKKTKQSLSPSENQSKMEILPKT 563


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 22.6 bits (46), Expect = 7.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 117 FSLKTVLMIAMQLLYRIEYVHTRHLIYRDVKPENFLIGRTATKKEKIV 164
           F +KT L I+   LY  +  H   +    +  EN L    +T K +++
Sbjct: 781 FDVKTTLNISDIALYPSQTTHGYDIYASSIDKENILFLDLSTGKVEMI 828


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.319    0.136    0.414 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,359
Number of Sequences: 429
Number of extensions: 5407
Number of successful extensions: 12
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 8
length of query: 472
length of database: 140,377
effective HSP length: 60
effective length of query: 412
effective length of database: 114,637
effective search space: 47230444
effective search space used: 47230444
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 45 (22.2 bits)