GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001511-TA|BGIBMGA001511-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (209 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   1.8  
DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory pro...    21   7.1  
DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory pro...    21   9.4  
DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory pro...    21   9.4  
AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical pro...    21   9.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.0 bits (47), Expect = 1.8
 Identities = 10/28 (35%), Positives = 18/28 (64%)

Query: 177  WAVDESQRPSSCQDARVDKLKDLPGSFR 204
            W VD ++ P+S + A  D +K+L  +F+
Sbjct: 1950 WQVDCNKGPASDKSAFADFVKELHEAFK 1977


>DQ855506-1|ABH88193.1|  124|Tribolium castaneum chemosensory
           protein 20 protein.
          Length = 124

 Score = 21.0 bits (42), Expect = 7.1
 Identities = 7/13 (53%), Positives = 11/13 (84%)

Query: 156 KREWIKKMEAKRD 168
           K++W K++EAK D
Sbjct: 96  KQDWWKQLEAKYD 108


>DQ855498-1|ABH88185.1|  127|Tribolium castaneum chemosensory
           protein 12 protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 156 KREWIKKMEAKRD 168
           KR+W  ++EAK D
Sbjct: 95  KRDWWNELEAKYD 107


>DQ855496-1|ABH88183.1|  129|Tribolium castaneum chemosensory
           protein 10 protein.
          Length = 129

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 156 KREWIKKMEAKRD 168
           KR+W  ++EAK D
Sbjct: 97  KRDWWNELEAKYD 109


>AJ973445-1|CAJ01492.1|  127|Tribolium castaneum hypothetical
           protein protein.
          Length = 127

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 7/13 (53%), Positives = 10/13 (76%)

Query: 156 KREWIKKMEAKRD 168
           KR+W  ++EAK D
Sbjct: 95  KRDWWNELEAKYD 107


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 47,948
Number of Sequences: 317
Number of extensions: 1936
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of query: 209
length of database: 114,650
effective HSP length: 54
effective length of query: 155
effective length of database: 97,532
effective search space: 15117460
effective search space used: 15117460
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 41 (20.6 bits)