Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001511-TA|BGIBMGA001511-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
(209 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce... 34 0.018
SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha... 27 1.5
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 27 1.5
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces... 27 2.7
SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p... 26 3.5
SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual 26 3.5
SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomy... 26 3.5
SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces pom... 26 4.6
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S... 25 8.1
SPAC821.12 |orb6||serine/threonine protein kinase Orb6|Schizosac... 25 8.1
>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1008
Score = 33.9 bits (74), Expect = 0.018
Identities = 20/75 (26%), Positives = 38/75 (50%), Gaps = 4/75 (5%)
Query: 90 RLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPNSDTLYKDIPQEILPSDYGGKA 149
RL + VIN P + + + PF+ + +KF+EP L + +P++ L S++GG
Sbjct: 769 RLGRALVINIPWAVWGFFKLISPFIDPITREKLKFNEP----LDRYVPKDQLDSNFGGSL 824
Query: 150 GSVEQIKREWIKKME 164
++ W + +E
Sbjct: 825 HFEYHHEKYWPQLVE 839
>SPCC794.01c |||glucose-6-phosphate 1-dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 475
Score = 27.5 bits (58), Expect = 1.5
Identities = 17/68 (25%), Positives = 29/68 (42%)
Query: 107 YAICKPFLKTEVAKLIKFHEPNSDTLYKDIPQEILPSDYGGKAGSVEQIKREWIKKMEAK 166
Y + P L V++LIK + + + I ++ + DY + + + W K K
Sbjct: 114 YLVLPPHLFAPVSELIKSKAHPNGMVTRLIVEKPIGFDYKSADAILSDLSKHWSAKDTFK 173
Query: 167 RDWFLTND 174
D FL D
Sbjct: 174 VDHFLGED 181
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 27.5 bits (58), Expect = 1.5
Identities = 24/89 (26%), Positives = 34/89 (38%), Gaps = 8/89 (8%)
Query: 82 YTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPNSDTLYKDIPQEI- 140
Y + MP+R V + S +L + K LKT K + H S D P +
Sbjct: 366 YMTDKMPLREIDVGSSQSSSKTARLNSSPKSTLKTSSVKTRRSHSAQSSRKVSDYPNMVV 425
Query: 141 -----LPSDYGGKAGSVE--QIKREWIKK 162
LP GS+E +I W +K
Sbjct: 426 ITPADLPEGIDTTQGSMEFDRIHNRWRRK 454
>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1441
Score = 26.6 bits (56), Expect = 2.7
Identities = 13/35 (37%), Positives = 20/35 (57%)
Query: 47 DQDVPAGEVPIFDSANVTLKFIGKINLSALRKYMI 81
DQ V A +VP D+ VT K + ++ +L K+ I
Sbjct: 765 DQSVSADDVPEVDNTIVTEKNVSNLDQESLEKHPI 799
>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 728
Score = 26.2 bits (55), Expect = 3.5
Identities = 13/36 (36%), Positives = 19/36 (52%)
Query: 9 KENYKVFIYRLSTTDLDLFNFVDAVKTFFMLADTRL 44
K+ K+FI +STT DL F A+ T L + +
Sbjct: 254 KDQKKLFINDVSTTKYDLLTFSGAIHTVSSLINPEI 289
>SPAC4F8.13c |rng2||IQGAP|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1489
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 7 KTKENYKVFIYRLSTTDLDLFNFVDAVKT 35
K E Y+ F Y L T ++ L N+ A+KT
Sbjct: 813 KFLELYQCFFYVLQTNEMYLANYFQALKT 841
>SPAC3A12.15 |vps53||GARP complex subunit Vps53 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 756
Score = 26.2 bits (55), Expect = 3.5
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 130 DTLYKDIPQEILPSDYGGKAGSVEQIKREWIKKMEAKR 167
+TL++ +P++I D G S+ + +E +KK++A +
Sbjct: 23 ETLHELLPEDITYDDLGSLRLSLSERLQESVKKLDANK 60
>SPAC6G10.02c |tea3||cell end marker Tea3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1125
Score = 25.8 bits (54), Expect = 4.6
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 6/57 (10%)
Query: 148 KAGSVEQIK-REWI-KKMEAKRDWFLTNDT-RWAVDESQRPSSCQDARVDKLKDLPG 201
++GS++Q R W+ +K++ TN + +W E+ +P+SC DA +K L G
Sbjct: 25 ESGSIDQQNIRAWVVRKVKENDKRTSTNQSFKW---EAVKPASCLDAANEKFMYLHG 78
>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
Mok11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2397
Score = 25.0 bits (52), Expect = 8.1
Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Query: 124 FHE-PNSDTLYKDIPQEILPSDYGGKAG 150
FHE NS T YKDI Q +L + +AG
Sbjct: 1717 FHEGQNSSTGYKDIVQGLLAENGVSEAG 1744
>SPAC821.12 |orb6||serine/threonine protein kinase
Orb6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 469
Score = 25.0 bits (52), Expect = 8.1
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 153 EQIKREWIKKMEAKRDWFLTNDTRWAV 179
E KR+ + ++A+RD + +D+ W V
Sbjct: 128 EMFKRDQLAHVKAERDLLVESDSPWVV 154
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 984,752
Number of Sequences: 5004
Number of extensions: 40922
Number of successful extensions: 114
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 106
Number of HSP's gapped (non-prelim): 10
length of query: 209
length of database: 2,362,478
effective HSP length: 70
effective length of query: 139
effective length of database: 2,012,198
effective search space: 279695522
effective search space used: 279695522
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 52 (25.0 bits)
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