Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001511-TA|BGIBMGA001511-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
(209 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0960 + 29221087-29221091,29221370-29221468,29221773-292218... 33 0.13
02_05_0770 - 31623415-31623960,31624467-31624709,31624808-316249... 31 0.51
06_03_1085 + 27491735-27492754,27492854-27492978,27493088-274932... 30 1.2
05_03_0218 - 10437377-10437622,10437896-10438141,10438528-104386... 29 2.1
03_06_0658 - 35335639-35335731,35335814-35335871,35336213-353363... 29 2.1
03_06_0298 - 32925441-32925998,32926371-32926730,32927161-329272... 29 2.7
10_08_0962 + 21880919-21880983,21881100-21881487,21881807-218819... 29 3.6
09_02_0102 - 4295329-4295366,4295622-4295702,4295946-4296252,429... 28 4.8
03_05_1065 + 30061588-30061883,30061995-30062056,30062196-300622... 28 4.8
09_02_0405 - 8597807-8598045,8599218-8599284,8599571-8599636,859... 28 6.3
03_05_0155 - 21307001-21307239,21308217-21308320,21308564-213087... 28 6.3
>03_05_0960 +
29221087-29221091,29221370-29221468,29221773-29221815,
29222056-29222154,29222240-29222485,29222633-29222941
Length = 266
Score = 33.5 bits (73), Expect = 0.13
Identities = 28/100 (28%), Positives = 45/100 (45%), Gaps = 8/100 (8%)
Query: 84 QEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKF----HEPNSDTLYKDIPQE 139
Q P RL + N P + + K FL + + + F +E + L+K I E
Sbjct: 140 QNHYPERLAIGILFNPPKVFEAFWKVVKHFLDPKSIQKVNFVYLKNEESMKILHKYIDPE 199
Query: 140 ILPSDYGGKAGSVEQIKREWIKKM---EAKRDWFLTNDTR 176
+LP ++GGK +V E+ K M + K F +DT+
Sbjct: 200 VLPVEFGGK-NNVVYSHEEYSKLMVKDDIKMASFWASDTK 238
>02_05_0770 -
31623415-31623960,31624467-31624709,31624808-31624906,
31625058-31625234,31625441-31625512
Length = 378
Score = 31.5 bits (68), Expect = 0.51
Identities = 22/85 (25%), Positives = 37/85 (43%), Gaps = 4/85 (4%)
Query: 68 IGKINLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKF--- 124
+ I+L + Q P RL + NAP + + I P L+ + +KF
Sbjct: 157 LSNISLHVTKLTADVLQGHYPERLGVAILYNAPKFFESFWKIASPILEPKTFNKVKFVYP 216
Query: 125 HEPNSDTLYKDI-PQEILPSDYGGK 148
P ++ + +D+ E L S +GGK
Sbjct: 217 DRPETNKIMEDLFNMEELESAFGGK 241
>06_03_1085 +
27491735-27492754,27492854-27492978,27493088-27493232,
27493328-27493591
Length = 517
Score = 30.3 bits (65), Expect = 1.2
Identities = 19/75 (25%), Positives = 34/75 (45%), Gaps = 2/75 (2%)
Query: 75 ALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPN--SDTL 132
A+++ + Q+ P + + +IN P + + PF+ P+ ++TL
Sbjct: 321 AMKQVLDLFQDNYPELVARNILINVPFWYYAFSTLFYPFMTQRTKSKFVIARPSKVTETL 380
Query: 133 YKDIPQEILPSDYGG 147
K IP E +P YGG
Sbjct: 381 LKYIPIEAIPVKYGG 395
>05_03_0218 -
10437377-10437622,10437896-10438141,10438528-10438611,
10438720-10438854
Length = 236
Score = 29.5 bits (63), Expect = 2.1
Identities = 20/85 (23%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 68 IGKINLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEP 127
I LS R+ M Q P + + N P + I K FL+ ++++ +KF
Sbjct: 115 ISSTPLSTSRESMHIVQNYYPGIIAVAILSNTPRIFESFWKIIKHFLEAKMSEKVKFLYT 174
Query: 128 NSDTLYKDIPQ----EILPSDYGGK 148
N+ +K + + ++L + +GG+
Sbjct: 175 NNPESHKIVSEMFDMDLLETAFGGR 199
>03_06_0658 -
35335639-35335731,35335814-35335871,35336213-35336355,
35336624-35336703,35336916-35337075,35337531-35337668,
35338487-35338567,35338640-35338693,35339192-35339297,
35339615-35339682,35340076-35340225,35340401-35340519,
35341151-35341362,35342118-35342205,35342365-35342479,
35343083-35343274,35343809-35344018
Length = 688
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/32 (43%), Positives = 19/32 (59%)
Query: 118 VAKLIKFHEPNSDTLYKDIPQEILPSDYGGKA 149
VA + +HEP S+ YK + QEIL G +A
Sbjct: 117 VALVDPYHEPPSELTYKQLEQEILDFSQGLRA 148
>03_06_0298 -
32925441-32925998,32926371-32926730,32927161-32927230,
32927642-32927797,32929181-32929242,32929339-32929352,
32930421-32930520,32931474-32932574
Length = 806
Score = 29.1 bits (62), Expect = 2.7
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 2/46 (4%)
Query: 148 KAGSVEQIKREWIKKMEAKRDWF-LTNDTRWAVDESQRPSSCQDAR 192
++ ++ + W K M + D+ N ++W D+S P SCQD+R
Sbjct: 369 ESSKIKAAGKAWYKTMISDSDYTEFENFSKWLADDSTVP-SCQDSR 413
>10_08_0962 +
21880919-21880983,21881100-21881487,21881807-21881931,
21882374-21882374,21882891-21883115,21888956-21889083,
21889176-21889227,21890205-21890351,21890444-21890566,
21890648-21890722,21890812-21890931,21892546-21892632,
21893115-21893183,21893262-21893353,21893465-21893584,
21893725-21893767,21893848-21893910,21894091-21894162,
21894247-21894291,21894354-21894424,21894508-21894573,
21894715-21894799
Length = 753
Score = 28.7 bits (61), Expect = 3.6
Identities = 30/125 (24%), Positives = 51/125 (40%), Gaps = 14/125 (11%)
Query: 16 IYRLSTTDLDLFNFVDAVKTFFMLADTRLTEDQDVPAGEVP-IFDSANVTLKFIGKINLS 74
+Y++S T + + VK F D+ + E+ VP +V + S T+K
Sbjct: 642 LYKISGTPHQISKAENLVKEFLQEMDSMVEEEISVPMEKVGLVIGSGGATIK-------- 693
Query: 75 ALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPNSDTLYK 134
KY +Y + + I ++ V + + +P K +V +I P D L
Sbjct: 694 ---KYKVYLEHLLRIYIQGVSQALQEGLLSGVLKTREPRAKNKVPMMI-LSPPKMDALKV 749
Query: 135 DIPQE 139
D PQE
Sbjct: 750 D-PQE 753
>09_02_0102 -
4295329-4295366,4295622-4295702,4295946-4296252,
4296616-4296696,4296818-4296919,4297358-4297396,
4297453-4297548,4297624-4297683,4297942-4297995,
4298230-4298307,4298577-4298630,4298705-4298788,
4300457-4300485,4300666-4300720
Length = 385
Score = 28.3 bits (60), Expect = 4.8
Identities = 15/57 (26%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
Query: 88 PIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIK-FHEPNSDTLYKDIPQEILPS 143
P + + ++NAP + + KP L+ + IK + D L K + E LP+
Sbjct: 197 PEKTETYFIVNAPYVFSACWKVVKPLLQERTKRKIKVLYGSGRDELLKVMDYEALPN 253
>03_05_1065 + 30061588-30061883,30061995-30062056,30062196-30062276,
30062391-30062464,30062547-30062629,30063044-30063147,
30063526-30063665,30063736-30063783,30063939-30063991,
30064178-30064262,30064346-30064412,30064496-30064606,
30065262-30065283,30066244-30071110,30071186-30071374,
30071463-30071577,30072329-30073388,30074247-30074694,
30074966-30075019,30075105-30076898,30076989-30077949,
30078271-30078384,30078459-30078613,30078934-30079026,
30079341-30079613,30093423-30093975,30094465-30094540,
30094619-30094718
Length = 4025
Score = 28.3 bits (60), Expect = 4.8
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 5/70 (7%)
Query: 103 IGKLYAICKPFLKTEVAKLIKFHEPNS--DTLYKDIPQEILPSD-YGGKAGSVEQIKREW 159
+ +Y + K + K + N+ ++++K +P PSD + GK + +K +
Sbjct: 2378 VSSIYNVYKTWQKRSQLAQAQLSSVNTVNNSIHKSVPPVPRPSDMFYGKI--IPALKEKG 2435
Query: 160 IKKMEAKRDW 169
IK++ ++RDW
Sbjct: 2436 IKRVISRRDW 2445
>09_02_0405 -
8597807-8598045,8599218-8599284,8599571-8599636,
8599731-8599795,8600514-8600872,8601118-8601125,
8601567-8601656,8601770-8601962,8603518-8603608,
8603948-8604080,8605340-8605480,8605601-8605662,
8605743-8605830,8606107-8606536,8606651-8606757
Length = 712
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 39 LADTRLTEDQDVPAGEVPIF---DSANVTLKFIGKINLS 74
L D+ L E DVP E P D+A+VT+K++G I+L+
Sbjct: 549 LTDSLLPE-LDVPCDEEPDIGGQDNASVTMKYVGIIHLN 586
>03_05_0155 -
21307001-21307239,21308217-21308320,21308564-21308772,
21308773-21308838,21308933-21308997,21309716-21309942,
21310156-21310269,21310515-21310522,21310964-21311053,
21311167-21311359,21312934-21313024,21313364-21313496,
21314756-21314896,21315017-21315078,21315159-21315246,
21315523-21315952,21316067-21316173
Length = 788
Score = 27.9 bits (59), Expect = 6.3
Identities = 17/39 (43%), Positives = 25/39 (64%), Gaps = 4/39 (10%)
Query: 39 LADTRLTEDQDVPAGEVPIF---DSANVTLKFIGKINLS 74
L D+ L E DVP E P D+A+VT+K++G I+L+
Sbjct: 543 LTDSLLPE-LDVPCDEEPDIGGQDNASVTMKYVGIIHLN 580
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.320 0.136 0.403
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,884,341
Number of Sequences: 37544
Number of extensions: 230748
Number of successful extensions: 492
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 491
Number of HSP's gapped (non-prelim): 12
length of query: 209
length of database: 14,793,348
effective HSP length: 79
effective length of query: 130
effective length of database: 11,827,372
effective search space: 1537558360
effective search space used: 1537558360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)
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