GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001511-TA|BGIBMGA001511-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (209 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10406| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.2  
SB_18624| Best HMM Match : EGF (HMM E-Value=7.8e-06)                   28   4.9  
SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)              28   4.9  
SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.9  
SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.6  

>SB_10406| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 268

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 9/32 (28%), Positives = 16/32 (50%)

Query: 169 WFLTNDTRWAVDESQRPSSCQDARVDKLKDLP 200
           WF     +W  DE Q+   C  A  + ++++P
Sbjct: 217 WFQNRRMKWKKDEKQKTEDCYSAHQENIEEIP 248


>SB_18624| Best HMM Match : EGF (HMM E-Value=7.8e-06)
          Length = 382

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/18 (55%), Positives = 15/18 (83%)

Query: 126 EPNSDTLYKDIPQEILPS 143
           EPNSD +Y D+ Q+++PS
Sbjct: 93  EPNSDYIYFDLQQKVVPS 110


>SB_20269| Best HMM Match : SOCS_box (HMM E-Value=4.6e-05)
          Length = 302

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)

Query: 111 KPFLKTEVAKLIKFHEPNSDTLYKDIPQEILPSDYGGKAGSVEQIKREWIKKMEAKRDWF 170
           KP  +  + +LI F++P +  L  +   E  P D GG+  + ++ K   +   E+ +D F
Sbjct: 37  KPATRRNLRELIAFYKPQNQGLLGNATIENYPEDPGGEVAARDERKTR-MHSCESLQDLF 95


>SB_18582| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 499

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 3/76 (3%)

Query: 55  VPIFDSANVTLKFIGKINLSALRKYMIYTQEAMPIRLKQVHVINAP--SYIGKLYAICKP 112
           V +F+SA    ++ G   L    KY+I+ Q +  I L  +  I A     IG L      
Sbjct: 91  VDVFNSAFTGFRYQGDFGLFKTEKYIIF-QVSHGIALNLLAFIPAAIIGAIGGLLGALFT 149

Query: 113 FLKTEVAKLIKFHEPN 128
           FL  ++A+  ++H  N
Sbjct: 150 FLNLKIARFRRYHIGN 165


>SB_18178| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 17/67 (25%), Positives = 30/67 (44%)

Query: 26  LFNFVDAVKTFFMLADTRLTEDQDVPAGEVPIFDSANVTLKFIGKINLSALRKYMIYTQE 85
           L N   A +      D  L++DQ      V IFD  N T   +G+I  +++   ++ +  
Sbjct: 89  LINMPAANQITLNFTDVSLSKDQSCDDAYVDIFDGDNSTYPLLGRICGNSIPPPVVSSGN 148

Query: 86  AMPIRLK 92
            M I+ +
Sbjct: 149 QMLIKFR 155


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,829,923
Number of Sequences: 59808
Number of extensions: 272531
Number of successful extensions: 632
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 628
Number of HSP's gapped (non-prelim): 5
length of query: 209
length of database: 16,821,457
effective HSP length: 79
effective length of query: 130
effective length of database: 12,096,625
effective search space: 1572561250
effective search space used: 1572561250
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 58 (27.5 bits)