GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001511-TA|BGIBMGA001511-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (209 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical pr...    45   3e-05
Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical pr...    45   5e-05
Z72508-9|CAA96639.2|  410|Caenorhabditis elegans Hypothetical pr...    40   0.001
U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical pr...    37   0.009
AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf famil...    33   0.11 
AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical...    33   0.11 
Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical pr...    30   1.1  
U64847-10|AAB04877.2|  404|Caenorhabditis elegans Hypothetical p...    29   2.4  
U64847-9|AAQ23119.1|  426|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical pr...    29   3.2  
AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical ...    29   3.2  
Z69635-5|CAA93458.1|  350|Caenorhabditis elegans Hypothetical pr...    28   4.3  
Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical ...    27   7.4  
AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical pr...    27   9.8  
Z30317-5|CAB54306.1|  378|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z81507-2|CAB04135.1|  388|Caenorhabditis elegans Hypothetical
           protein F18A11.2 protein.
          Length = 388

 Score = 45.2 bits (102), Expect = 3e-05
 Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 1/80 (1%)

Query: 88  PIRLKQVHVINAPSYIGKLYAICKPFLKTEV-AKLIKFHEPNSDTLYKDIPQEILPSDYG 146
           P  L+++ ++NAPS++  L+  C PFL  +   K++   EP    + K   +  LPSD G
Sbjct: 181 PQLLQKIIIVNAPSFVNVLHQACSPFLPEDYKEKIVITSEPAIGAIQKHADKCFLPSDLG 240

Query: 147 GKAGSVEQIKREWIKKMEAK 166
           G       +      KM  K
Sbjct: 241 GDLEKTTSLPMAPFPKMNKK 260


>Z66524-6|CAA91418.2|  408|Caenorhabditis elegans Hypothetical
           protein T13H5.2 protein.
          Length = 408

 Score = 44.8 bits (101), Expect = 5e-05
 Identities = 29/129 (22%), Positives = 61/129 (47%), Gaps = 1/129 (0%)

Query: 20  STTDLDLFNFVDAVKTFFMLADTRLTEDQDVPAGEVPIFDSANVTLKFIGKINLSALRKY 79
           +T + DL+    A     M    ++ ++Q  P G   IFD   +++  I    L  +   
Sbjct: 136 ATRNSDLYRMRIAESEGVMQIIRKMEKEQGKPLGTSVIFDLDGLSMVQIDLAALKVVTTM 195

Query: 80  MIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPN-SDTLYKDIPQ 138
           +   QE  P  ++++ ++N P++I  L+++  P L  +  + +K    +    L ++I +
Sbjct: 196 LSQLQEMFPDVIRKIFIVNTPTFIQVLWSMISPCLAKQTQQKVKILGNDWKQHLKENIGE 255

Query: 139 EILPSDYGG 147
           E+L   +GG
Sbjct: 256 EVLFERWGG 264


>Z72508-9|CAA96639.2|  410|Caenorhabditis elegans Hypothetical
           protein F28H7.8 protein.
          Length = 410

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 1/62 (1%)

Query: 96  VINAPSYIGKLYAICKPFLKTEVAKLIKFHEPN-SDTLYKDIPQEILPSDYGGKAGSVEQ 154
           VIN+PSYI  L++   PF+  +  + I F   N  + L   + +E LP  YGG    ++ 
Sbjct: 199 VINSPSYINVLWSALSPFIPEQSKQRIVFAGSNWKEELLDIVDKECLPERYGGMIPDIQC 258

Query: 155 IK 156
           +K
Sbjct: 259 LK 260


>U58734-6|AAB52505.3|  383|Caenorhabditis elegans Hypothetical
           protein T27A10.7 protein.
          Length = 383

 Score = 37.1 bits (82), Expect = 0.009
 Identities = 22/107 (20%), Positives = 51/107 (47%), Gaps = 2/107 (1%)

Query: 43  RLTEDQ-DVPAGEVPIFDSANVTLKFIGKINLSALRKYMIYTQEAMPIRLKQVHVINAPS 101
           R TE + +   G + I D    ++  +    L      +   Q   P   +++++IN P+
Sbjct: 151 RQTEQETERKMGVIIIMDLDGFSMDLLYTPTLKVYMSLLTMLQNIFPDFARRIYIINCPA 210

Query: 102 YIGKLYAICKPFLKTEVAKLIKFHEPN-SDTLYKDIPQEILPSDYGG 147
            +  +YA+  P L ++  + ++F + +  + L ++I +E +   +GG
Sbjct: 211 MMSAVYAMVSPVLSSQTREKVRFLDKDWKNHLIEEIGEENIFMHWGG 257


>AY551965-1|AAS65429.1| 2395|Caenorhabditis elegans Swi/Snf family
           ATPase protein.
          Length = 2395

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 8/75 (10%)

Query: 130 DTLYKDIPQEILPSDYGGKAGSVEQIKREWIKKMEAKRDWFLTNDTRWAVDES-----QR 184
           D LY  +P E L + YG     +E++KRE +++ +A+++    N+ +  +DES     Q+
Sbjct: 418 DFLYT-LPPEYLKA-YGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSDAQK 475

Query: 185 PS-SCQDARVDKLKD 198
           PS S  D   ++L+D
Sbjct: 476 PSTSSSDLTAEQLQD 490


>AL132904-26|CAC35851.3| 2395|Caenorhabditis elegans Hypothetical
           protein Y111B2A.22 protein.
          Length = 2395

 Score = 33.5 bits (73), Expect = 0.11
 Identities = 24/75 (32%), Positives = 43/75 (57%), Gaps = 8/75 (10%)

Query: 130 DTLYKDIPQEILPSDYGGKAGSVEQIKREWIKKMEAKRDWFLTNDTRWAVDES-----QR 184
           D LY  +P E L + YG     +E++KRE +++ +A+++    N+ +  +DES     Q+
Sbjct: 418 DFLYT-LPPEYLKA-YGLTQEDLEEMKREKLEEQKARKEACGDNEEKMEIDESPSSDAQK 475

Query: 185 PS-SCQDARVDKLKD 198
           PS S  D   ++L+D
Sbjct: 476 PSTSSSDLTAEQLQD 490


>Z68161-7|CAD36488.1| 1130|Caenorhabditis elegans Hypothetical protein
            F20C5.2b protein.
          Length = 1130

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 21/86 (24%), Positives = 38/86 (44%), Gaps = 2/86 (2%)

Query: 20   STTDLDLFNFVDAVKTFFMLADTRLTEDQDVPAGEVPIFDSANVTLKFIGKINLSALRKY 79
            ST  LD F  ++    F++ +D   ++D D   G     D    T +   K  L ++R+ 
Sbjct: 1006 STVSLDSFELMNTKSNFYLDSDESSSDDSDAEFGAECSVDGVVETPRTRRK--LISVRRL 1063

Query: 80   MIYTQEAMPIRLKQVHVINAPSYIGK 105
                ++     +K++H   +PS I K
Sbjct: 1064 KDRNRKKFKCSMKRLHPPTSPSKISK 1089


>U64847-10|AAB04877.2|  404|Caenorhabditis elegans Hypothetical
           protein F08F3.9a protein.
          Length = 404

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 107 YAICKPFLKTEVAKLIKFHEPNSDTLYKDIPQE 139
           YAIC+  L+ +  K + F   N  TL+K   Q+
Sbjct: 138 YAICQKLLEDQAFKFVAFLHANDPTLFKRFGQD 170


>U64847-9|AAQ23119.1|  426|Caenorhabditis elegans Hypothetical
           protein F08F3.9b protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)

Query: 107 YAICKPFLKTEVAKLIKFHEPNSDTLYKDIPQE 139
           YAIC+  L+ +  K + F   N  TL+K   Q+
Sbjct: 138 YAICQKLLEDQAFKFVAFLHANDPTLFKRFGQD 170


>Z19158-4|CAJ76964.1|  719|Caenorhabditis elegans Hypothetical
           protein T23G5.2a protein.
          Length = 719

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/95 (20%), Positives = 40/95 (42%), Gaps = 4/95 (4%)

Query: 57  IFDSANVTLKFIGKINLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKT 116
           + D   ++++ + +  +  L K +   +   P  + QV V+ AP     L+ +  PF+  
Sbjct: 395 VVDLDGLSMRHLWRPGVQCLLKIIEIVEANYPETMGQVLVVRAPRVFPVLWTLISPFIDE 454

Query: 117 EVAKLIKFHEPN----SDTLYKDIPQEILPSDYGG 147
           +  K       +     + L K I ++ +P   GG
Sbjct: 455 KTRKKFMVSGGSGGDLKEELRKHIEEKFIPDFLGG 489


>AF077545-3|AAC26304.1|  396|Caenorhabditis elegans Hypothetical
           protein H41C03.1 protein.
          Length = 396

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 5/70 (7%)

Query: 81  IYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPNSD---TLYKDIP 137
           +YT  A P  +  + +INAPS++  L+    P L       ++    NSD   ++ K   
Sbjct: 172 VYT--AYPEWINTLFLINAPSFMTLLWKAIGPLLPERTRNKVRICSGNSDWKTSVQKHAH 229

Query: 138 QEILPSDYGG 147
            + +P  +GG
Sbjct: 230 IDNIPKHWGG 239


>Z69635-5|CAA93458.1|  350|Caenorhabditis elegans Hypothetical
           protein F19B6.3 protein.
          Length = 350

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 2/55 (3%)

Query: 146 GGKAGSVEQIKREWIKKMEAKRDWFLTNDTRWAVDESQRPSSCQDARVDKLKDLP 200
           GG AG+V  I  E I K+E   +  L      A+D     S+ + AR+D + D P
Sbjct: 87  GGPAGAV--IIGERIAKIENSSEGVLFTSESVALDAGTVESAVEFARIDNILDFP 139


>Z79597-2|CAB01860.2|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 94  VHVINAPSYIGKLYAICKPFLKT 116
           +H++ A + +GK+YA+C+   KT
Sbjct: 380 LHIVAAHNDLGKIYALCETLRKT 402


>Z66524-3|CAB54303.1|  475|Caenorhabditis elegans Hypothetical
           protein T13H5.6 protein.
          Length = 475

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 20/80 (25%), Positives = 35/80 (43%)

Query: 35  TFFMLADTRLTEDQDVPAGEVPIFDSANVTLKFIGKINLSALRKYMIYTQEAMPIRLKQV 94
           T+ +L+  RL  D       V +FD   + L   G    +  R+ ++YT  +       +
Sbjct: 13  TWTLLSIARLVFDLIGNLWVVVVFDFVQIVLLISGLFGATQKRRPLLYTLLSSNALSVTI 72

Query: 95  HVINAPSYIGKLYAICKPFL 114
           +V+    YIG    I +P+L
Sbjct: 73  NVLIFLWYIGVFGEISRPYL 92


>AL132841-7|CAB61033.1|  611|Caenorhabditis elegans Hypothetical
           protein C33A11.1 protein.
          Length = 611

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/23 (39%), Positives = 17/23 (73%)

Query: 94  VHVINAPSYIGKLYAICKPFLKT 116
           +H++ A + +GK+YA+C+   KT
Sbjct: 380 LHIVAAHNDLGKIYALCETLRKT 402


>AF014939-4|AAB63932.1| 1277|Caenorhabditis elegans Hypothetical
            protein ZC132.5 protein.
          Length = 1277

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 15/61 (24%), Positives = 30/61 (49%), Gaps = 2/61 (3%)

Query: 77   RKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHE--PNSDTLYK 134
            + Y+   +E   +R+     IN   ++G++  IC P L     K+ K  E  P++D + +
Sbjct: 1057 KTYLSELRETHKLRMDNKREINDSPFVGQVVLICDPNLPRNNWKMGKITETKPSTDGILR 1116

Query: 135  D 135
            +
Sbjct: 1117 E 1117


>Z68014-4|CAA92026.2|  588|Caenorhabditis elegans Hypothetical
           protein W04G3.4 protein.
          Length = 588

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 13/46 (28%), Positives = 22/46 (47%)

Query: 81  IYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHE 126
           ++  E   + LK +   N P  +     + K  ++TE  KL+K HE
Sbjct: 168 VFDNEEQAVLLKALLSSNRPEDLETANNLIKTLVETEEHKLVKIHE 213


>Z30317-5|CAB54306.1|  378|Caenorhabditis elegans Hypothetical
           protein T16G12.8 protein.
          Length = 378

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 10/27 (37%), Positives = 17/27 (62%)

Query: 16  IYRLSTTDLDLFNFVDAVKTFFMLADT 42
           +Y   + +L +F+F+ A  TFF+L  T
Sbjct: 264 LYASVSNNLSVFSFIKAYSTFFLLVST 290


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,197,770
Number of Sequences: 27539
Number of extensions: 211439
Number of successful extensions: 525
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 514
Number of HSP's gapped (non-prelim): 18
length of query: 209
length of database: 12,573,161
effective HSP length: 78
effective length of query: 131
effective length of database: 10,425,119
effective search space: 1365690589
effective search space used: 1365690589
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 57 (27.1 bits)