GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001511-TA|BGIBMGA001511-PA|IPR001251|Cellular
retinaldehyde-binding/triple function, C-terminal
         (209 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    22   4.9  
AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin prot...    22   4.9  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    22   4.9  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 130 DTLYKDIPQEILPSDYGGKAGSVEQIKREWIKKMEAKRDW 169
           D+  KD+     P DYG +  S++  +    KK E   +W
Sbjct: 139 DSRSKDVYLIDYPEDYGKRVLSMDGYQNILDKKDELLGEW 178


>AB073996-1|BAC76400.1|  215|Apis mellifera preprotachykinin
           protein.
          Length = 215

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 130 DTLYKDIPQEILPSDYGGKAGSVEQIKREWIKKMEAKRDW 169
           D+  KD+     P DYG +  S++  +    KK E   +W
Sbjct: 139 DSRSKDVYLIDYPEDYGKRVLSMDGYQNILDKKDELLGEW 178


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 21.8 bits (44), Expect = 4.9
 Identities = 12/40 (30%), Positives = 19/40 (47%)

Query: 130 DTLYKDIPQEILPSDYGGKAGSVEQIKREWIKKMEAKRDW 169
           D+  KD+     P DYG +  S++  +    KK E   +W
Sbjct: 139 DSRSKDVYLIDYPEDYGKRVLSMDGYQNILDKKDELLGEW 178


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 60,112
Number of Sequences: 429
Number of extensions: 2419
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 209
length of database: 140,377
effective HSP length: 55
effective length of query: 154
effective length of database: 116,782
effective search space: 17984428
effective search space used: 17984428
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 42 (21.0 bits)