BLASTP 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= BGIBMGA001511-TA|BGIBMGA001511-PA|IPR001251|Cellular retinaldehyde-binding/triple function, C-terminal (209 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative / phos... 41 5e-04 At3g51670.1 68416.m05666 SEC14 cytosolic factor family protein /... 38 0.004 At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein /... 36 0.020 At1g22180.3 68414.m02773 SEC14 cytosolic factor family protein /... 36 0.020 At1g22180.2 68414.m02774 SEC14 cytosolic factor family protein /... 36 0.020 At1g22180.1 68414.m02772 SEC14 cytosolic factor family protein /... 36 0.020 At1g14820.3 68414.m01773 SEC14 cytosolic factor family protein /... 35 0.046 At1g14820.2 68414.m01772 SEC14 cytosolic factor family protein /... 35 0.046 At1g14820.1 68414.m01771 SEC14 cytosolic factor family protein /... 35 0.046 At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein /... 33 0.11 At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein /... 33 0.11 At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein /... 32 0.25 At4g36640.1 68417.m05200 SEC14 cytosolic factor family protein /... 32 0.32 At1g75170.1 68414.m08731 SEC14 cytosolic factor family protein /... 32 0.32 At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative 31 0.43 At1g31240.1 68414.m03823 expressed protein identical to hypothet... 30 0.99 At3g58980.1 68416.m06574 F-box family protein contains two F-box... 29 1.7 At2g16380.1 68415.m01874 SEC14 cytosolic factor family protein /... 29 2.3 At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family pro... 28 5.3 At4g38540.1 68417.m05456 monooxygenase, putative (MO2) identical... 27 9.2 At3g22410.1 68416.m02827 expressed protein 27 9.2 >At1g01630.1 68414.m00080 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative contains Pfam PF00650 : CRAL/TRIO domain and PF03765 : CRAL/TRIO, N-terminus; similar to polyphosphoinositide binding protein Ssh2p GB:AAB94599 GI:2739046 from [Glycine max] Length = 255 Score = 41.1 bits (92), Expect = 5e-04 Identities = 22/67 (32%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Query: 84 QEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPN--SDTLYKDIPQEIL 141 Q+ P RL ++++++AP + + PF+ K I F E + TL +DI + L Sbjct: 180 QDCYPERLGKLYIVHAPYIFMTAWKVIYPFIDANTKKKIVFVENKKLTPTLLEDIDESQL 239 Query: 142 PSDYGGK 148 P YGGK Sbjct: 240 PDIYGGK 246 >At3g51670.1 68416.m05666 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to polyphosphoinositide binding protein Ssh2p (GI:2739046) {Glycine max};; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus Length = 409 Score = 38.3 bits (85), Expect = 0.004 Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 2/53 (3%) Query: 97 INAPSYIGKLYAICKPFLKTEV-AKLIKFHEPNS-DTLYKDIPQEILPSDYGG 147 IN P Y +Y++ PFL +K + E N+ +TLYK I E +P YGG Sbjct: 236 INVPWYFSVIYSMFSPFLTQRTKSKFVMSKEGNAAETLYKFIRPEDIPVQYGG 288 >At4g08690.1 68417.m01432 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650: CRAL/TRIO domain; similar to polyphosphoinositide binding protein Ssh2p (GI:2739046) [Glycine max]; similar to SEC14-like protein (GB:U82515) [D. discoideum] Length = 301 Score = 35.9 bits (79), Expect = 0.020 Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 6/126 (4%) Query: 48 QDVPAGEVPIFDSANVTLKFIGKINLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLY 107 Q++P GE + + + ++L ++ QE P RL + N P + + Sbjct: 135 QNLPPGEEQMVWMIDFHGYSLANVSLRTTKETAHVLQEHYPERLAFAVLYNPPKFFEPFW 194 Query: 108 AICKPFLKTEVAKLIKF---HEPNSDTLYKD-IPQEILPSDYGGKAGSVEQIKR--EWIK 161 + +PFL+ + +KF +PN+ + ++ E + +GG S I++ E +K Sbjct: 195 KVARPFLEPKTRNKVKFVYSDDPNTKVIMEENFDMEKMELAFGGNDDSGFNIEKHSERMK 254 Query: 162 KMEAKR 167 + + KR Sbjct: 255 EDDKKR 260 >At1g22180.3 68414.m02773 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam profile: PF00650 CRAL/TRIO domain; similar to polyphosphoinositide binding protein Ssh1p (GI:|2739044) {Glycine max}; similar to Phosphatidylinositol Transfer Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae] Length = 249 Score = 35.9 bits (79), Expect = 0.020 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 71 INLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKF--HEPN 128 I+L R+ QE P RL V N P Y + KPFL+ + + +KF + N Sbjct: 96 ISLKVSRETAHVLQEHYPERLGLAIVYNPPKIFESFYKMVKPFLEPKTSNKVKFVYSDDN 155 Query: 129 -SDTLYKDI-PQEILPSDYGGK 148 S+ L +D+ E L +GGK Sbjct: 156 LSNKLLEDLFDMEQLEVAFGGK 177 >At1g22180.2 68414.m02774 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam profile: PF00650 CRAL/TRIO domain; similar to polyphosphoinositide binding protein Ssh1p (GI:|2739044) {Glycine max}; similar to Phosphatidylinositol Transfer Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae] Length = 314 Score = 35.9 bits (79), Expect = 0.020 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 71 INLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKF--HEPN 128 I+L R+ QE P RL V N P Y + KPFL+ + + +KF + N Sbjct: 161 ISLKVSRETAHVLQEHYPERLGLAIVYNPPKIFESFYKMVKPFLEPKTSNKVKFVYSDDN 220 Query: 129 -SDTLYKDI-PQEILPSDYGGK 148 S+ L +D+ E L +GGK Sbjct: 221 LSNKLLEDLFDMEQLEVAFGGK 242 >At1g22180.1 68414.m02772 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam profile: PF00650 CRAL/TRIO domain; similar to polyphosphoinositide binding protein Ssh1p (GI:|2739044) {Glycine max}; similar to Phosphatidylinositol Transfer Protein Sec14p (GI:2780955) [Saccharomyces cerevisiae] Length = 249 Score = 35.9 bits (79), Expect = 0.020 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 4/82 (4%) Query: 71 INLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKF--HEPN 128 I+L R+ QE P RL V N P Y + KPFL+ + + +KF + N Sbjct: 96 ISLKVSRETAHVLQEHYPERLGLAIVYNPPKIFESFYKMVKPFLEPKTSNKVKFVYSDDN 155 Query: 129 -SDTLYKDI-PQEILPSDYGGK 148 S+ L +D+ E L +GGK Sbjct: 156 LSNKLLEDLFDMEQLEVAFGGK 177 >At1g14820.3 68414.m01773 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; similar to phosphatidylinositol/phosphatidylcholine transfer protein SP:P24280 [Saccharomyces cerevisiae (Baker's yeast)] Length = 252 Score = 34.7 bits (76), Expect = 0.046 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 55 VPIFDSANVTLKFIGKINLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYA-ICKPF 113 V + D AN+T K ++ L + Q P RL + ++++ P + ++ +C+ Sbjct: 136 VAVIDLANITYK---NLDARGLITGFQFLQSYYPERLAKCYILHMPGFFVTVWKFVCRFL 192 Query: 114 LKTEVAKLIKFHEPNSDTLYKD-IPQEILPSDYGGKA 149 K K++ + +++ I + LP +YGG+A Sbjct: 193 EKATQEKIVIVTDGEEQRKFEEEIGADALPEEYGGRA 229 >At1g14820.2 68414.m01772 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; similar to phosphatidylinositol/phosphatidylcholine transfer protein SP:P24280 [Saccharomyces cerevisiae (Baker's yeast)] Length = 239 Score = 34.7 bits (76), Expect = 0.046 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 55 VPIFDSANVTLKFIGKINLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYA-ICKPF 113 V + D AN+T K ++ L + Q P RL + ++++ P + ++ +C+ Sbjct: 123 VAVIDLANITYK---NLDARGLITGFQFLQSYYPERLAKCYILHMPGFFVTVWKFVCRFL 179 Query: 114 LKTEVAKLIKFHEPNSDTLYKD-IPQEILPSDYGGKA 149 K K++ + +++ I + LP +YGG+A Sbjct: 180 EKATQEKIVIVTDGEEQRKFEEEIGADALPEEYGGRA 216 >At1g14820.1 68414.m01771 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; similar to phosphatidylinositol/phosphatidylcholine transfer protein SP:P24280 [Saccharomyces cerevisiae (Baker's yeast)] Length = 239 Score = 34.7 bits (76), Expect = 0.046 Identities = 22/97 (22%), Positives = 46/97 (47%), Gaps = 5/97 (5%) Query: 55 VPIFDSANVTLKFIGKINLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYA-ICKPF 113 V + D AN+T K ++ L + Q P RL + ++++ P + ++ +C+ Sbjct: 123 VAVIDLANITYK---NLDARGLITGFQFLQSYYPERLAKCYILHMPGFFVTVWKFVCRFL 179 Query: 114 LKTEVAKLIKFHEPNSDTLYKD-IPQEILPSDYGGKA 149 K K++ + +++ I + LP +YGG+A Sbjct: 180 EKATQEKIVIVTDGEEQRKFEEEIGADALPEEYGGRA 216 >At4g09160.1 68417.m01517 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to polyphosphoinositide binding protein Ssh1p (GI:2739044) {Glycine max}; similar to polyphosphoinositide binding protein Ssh2, Glycine max, gb:T05953; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus Length = 668 Score = 33.5 bits (73), Expect = 0.11 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%) Query: 69 GKINLSALRKYMIYT-QEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEP 127 GK L K ++ Q+ P + + IN P + Y I PF+ + F P Sbjct: 465 GKTELRLATKQALHLLQDNYPEFVSKQIFINVPWWYLAFYRIISPFMSQRSKSKLVFAGP 524 Query: 128 N--SDTLYKDIPQEILPSDYGG 147 + ++TL K I E +P YGG Sbjct: 525 SRSAETLLKYISPEHVPVQYGG 546 >At1g72160.1 68414.m08343 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to GI:807956 from [Saccharomyces cerevisiae]similar to polyphosphoinositide binding protein Ssh2p (GI:2739046) {Glycine max}; contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus Length = 490 Score = 33.5 bits (73), Expect = 0.11 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 3/83 (3%) Query: 68 IGKINL-SALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHE 126 +GK L SA ++ + Q+ P + + IN P + Y + PF+ + F Sbjct: 289 LGKKELRSATKQAVELLQDNYPEFVFKQAFINVPWWYLVFYTVIGPFMTPRSKSKLVFAG 348 Query: 127 PN--SDTLYKDIPQEILPSDYGG 147 P+ ++TL+K I E +P YGG Sbjct: 349 PSRSAETLFKYISPEQVPVQYGG 371 >At1g30690.1 68414.m03752 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP:P24280) [Saccharomyces cerevisiae]; ESTs gb|T76582, gb|N06574 and gb|Z25700 come from this gene Length = 540 Score = 32.3 bits (70), Expect = 0.25 Identities = 21/74 (28%), Positives = 32/74 (43%), Gaps = 2/74 (2%) Query: 76 LRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPNS--DTLY 133 ++K + Q+ P + + IN P + + A+ PFL P +TL Sbjct: 349 IKKVIETLQDNYPEFVSRNIFINVPFWFYAMRAVLSPFLTQRTKSKFVVARPAKVRETLL 408 Query: 134 KDIPQEILPSDYGG 147 K IP + LP YGG Sbjct: 409 KYIPADELPVQYGG 422 >At4g36640.1 68417.m05200 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to polyphosphoinositide binding protein Ssh1p (GI:2739044) {Glycine max, SEC14 cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis] and to SEC14 cytosolic factor (SP:P53989) [Candida glabrata] Length = 294 Score = 31.9 bits (69), Expect = 0.32 Identities = 24/81 (29%), Positives = 34/81 (41%), Gaps = 4/81 (4%) Query: 73 LSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPN---S 129 + R+ + Q P RL + N P +Y K FL A+ +KF P S Sbjct: 159 MKTTREIIHILQNYYPERLGIAFLYNPPRLFQAVYRAAKYFLDPRTAEKVKFVYPKDKAS 218 Query: 130 DTLY-KDIPQEILPSDYGGKA 149 D L E LP ++GG+A Sbjct: 219 DELMTTHFDVENLPKEFGGEA 239 >At1g75170.1 68414.m08731 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein similar to polyphosphoinositide binding protein Ssh1p (GI:2739044) {Glycine max}; similar to SEC14 cytosolic factor (Phosphatidylinositol/phosphatidylcholine transfer protein) (PI/PCTP) (SP:P24859) [Kluyveromyces lactis] and to SEC14 cytosolic factor (SP:P53989) [Candida glabrata] Length = 296 Score = 31.9 bits (69), Expect = 0.32 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 4/83 (4%) Query: 71 INLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEP-NS 129 + + + R+ + Q P RL + N P + I K F+ + +KF P NS Sbjct: 160 VPIKSARETINILQNHYPERLAVAFLYNPPRLFEAFWKIVKYFIDAKTFVKVKFVYPKNS 219 Query: 130 DT---LYKDIPQEILPSDYGGKA 149 ++ + +E LP+++GGKA Sbjct: 220 ESVELMSTFFDEENLPTEFGGKA 242 >At5g63060.1 68418.m07912 SEC14 cytosolic factor, putative Length = 268 Score = 31.5 bits (68), Expect = 0.43 Identities = 19/59 (32%), Positives = 35/59 (59%), Gaps = 4/59 (6%) Query: 88 PIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLIKFHEPNSDTLYKD-IPQEILPSDY 145 P RL +V ++AP ++ KP +K + A L+KF +++T+ K+ +E LPS++ Sbjct: 211 PSRLDEVLFVDAPFIFQPIWQFTKPLVK-QYASLVKF--CSAETVRKEYFTEETLPSNF 266 >At1g31240.1 68414.m03823 expressed protein identical to hypothetical protein GB:AAD21690 GI:4512621 from (Arabidopsis thaliana) Length = 277 Score = 30.3 bits (65), Expect = 0.99 Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 3/49 (6%) Query: 128 NSDTLYKDIPQEILPSDYGGKAGSVEQIKREWIKKMEAKRDWFLTNDTR 176 NSD++ I +EILP K+G + R+ ++ +RDW DTR Sbjct: 197 NSDSV---IRREILPESLKSKSGGRLPVMRDKVRFKMEQRDWSSGGDTR 242 >At3g58980.1 68416.m06574 F-box family protein contains two F-box domains Pfam:PF00646 Length = 594 Score = 29.5 bits (63), Expect = 1.7 Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 9/81 (11%) Query: 137 PQEILP-SDYGGKAGSVEQIKREWIKKMEAKRDWFLTNDTRWAVDESQ-----RPSS-CQ 189 P E+L +DY G G VEQ+K +++K+ + L + TR+ D+ + R SS C+ Sbjct: 380 PLEVLQITDYSGTPGEVEQLK-HFLEKLSGLKLVKLHSLTRFGSDKKKLLMLPRASSKCK 438 Query: 190 DARVDKLKD-LPGSFRSLALD 209 D L++ L S ++L LD Sbjct: 439 IKHYDSLENALLPSLKTLILD 459 >At2g16380.1 68415.m01874 SEC14 cytosolic factor family protein / phosphoglyceride transfer family protein contains Pfam PF00650 : CRAL/TRIO domain; contains Pfam PF03765 : CRAL/TRIO, N-terminus; similar to phosphatidylinositol transfer-like protein III (GI:14486705) [Lotus japonicus] Length = 547 Score = 29.1 bits (62), Expect = 2.3 Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 1/92 (1%) Query: 57 IFDSANVTLKFIGKINLSALRKYMIYTQEAMPIRLKQVHVINAPSYIGKLYAICKPFLKT 116 IFD V LK K L++ + + P L ++ +INA L+A K FL Sbjct: 207 IFDVQGVGLKNFNKSARELLQRLLKIDNDNYPETLNRMFIINAGPGFRLLWAPIKKFLDP 266 Query: 117 E-VAKLIKFHEPNSDTLYKDIPQEILPSDYGG 147 + +K+ L + I LP +GG Sbjct: 267 KTTSKIHVLGNKYQPKLLEAIDASELPYFFGG 298 >At1g53020.1 68414.m06002 ubiquitin-conjugating enzyme family protein similar to ubiquitin-conjugating enzyme GB:3319990 from [Mus musculus]; contains Pfam profile PF00179: Ubiquitin-conjugating enzyme Length = 1163 Score = 27.9 bits (59), Expect = 5.3 Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%) Query: 135 DIPQEILPSDYGGKAGSVEQIKREWIKKMEAKRDW-FLTNDTRWAV 179 D ++ Y K S +Q + W+KK++A DW L ND A+ Sbjct: 248 DTVEDFSDHHYASKGKSSKQHSKNWVKKVQA--DWKILENDLPEAI 291 >At4g38540.1 68417.m05456 monooxygenase, putative (MO2) identical to GI:3426064 Length = 407 Score = 27.1 bits (57), Expect = 9.2 Identities = 12/38 (31%), Positives = 23/38 (60%), Gaps = 1/38 (2%) Query: 169 WFLTNDTRWAVDESQRPSSCQDARVDKLKDLPGSFRSL 206 WFLT+ T +DE ++ ++K+KDLP + +++ Sbjct: 218 WFLTH-TSTDIDEETNSEILKEFVLNKIKDLPENIKNV 254 >At3g22410.1 68416.m02827 expressed protein Length = 400 Score = 27.1 bits (57), Expect = 9.2 Identities = 11/35 (31%), Positives = 20/35 (57%) Query: 88 PIRLKQVHVINAPSYIGKLYAICKPFLKTEVAKLI 122 P RL + +I+ PS+ L+ +PF++ A +I Sbjct: 165 PCRLYKAFIIDPPSFFSYLWKGVRPFVELSTATMI 199 Database: arabidopsis Posted date: Oct 3, 2007 3:31 PM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.320 0.136 0.403 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 4,921,136 Number of Sequences: 28952 Number of extensions: 198005 Number of successful extensions: 446 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 8 Number of HSP's successfully gapped in prelim test: 13 Number of HSP's that attempted gapping in prelim test: 434 Number of HSP's gapped (non-prelim): 21 length of query: 209 length of database: 12,070,560 effective HSP length: 78 effective length of query: 131 effective length of database: 9,812,304 effective search space: 1285411824 effective search space used: 1285411824 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.8 bits) S2: 57 (27.1 bits)
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