Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001510-TA|BGIBMGA001510-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR005113|uDENN, IPR001194|DENN, IPR005112|dDENN,
IPR002885|Pentatricopeptide repeat
(1604 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610... 52 3e-06
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 50 1e-05
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 40 0.022
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 38 0.087
02_04_0071 + 19457502-19458092,19458558-19458723,19458816-194590... 36 0.27
05_03_0353 - 12856385-12857705,12858007-12858959 35 0.47
04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155 35 0.61
10_01_0078 - 1012031-1012084,1012998-1013105,1013610-1013661,101... 33 1.9
04_04_1167 + 31432731-31433769,31433893-31433941,31434363-314344... 33 1.9
10_08_0419 - 17783202-17784938 33 2.5
03_05_0992 + 29528126-29529931 33 2.5
01_01_0365 - 2859617-2859722,2860047-2860489,2862232-2862391,286... 33 2.5
11_01_0060 + 453615-454030,454086-455862 31 5.7
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341... 31 5.7
02_01_0424 - 3097245-3099377 31 5.7
11_06_0621 + 25587476-25587604,25588230-25588423,25588800-255888... 31 7.6
>01_05_0439 -
22159425-22159520,22160137-22160345,22161028-22161066,
22161196-22161356,22161447-22161518,22162002-22162183,
22162580-22162703,22164196-22164299,22165526-22165725,
22165838-22166069,22166156-22166239,22166329-22166386,
22166724-22166771,22167924-22168081,22168451-22168501,
22168585-22168658,22168760-22168835,22169685-22169729,
22169833-22169899,22169978-22170095,22170580-22170775,
22171551-22171640,22171985-22172039,22172755-22172975,
22173362-22173454,22173608-22173721,22173918-22173981,
22174081-22174181,22174306-22174447,22174528-22174729,
22174883-22174976,22176172-22176348
Length = 1248
Score = 52.4 bits (120), Expect = 3e-06
Identities = 23/60 (38%), Positives = 38/60 (63%)
Query: 343 ITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVDS 402
+ E++IL+ S + LT VSEA+ L++P +WQ YIP+ + + AP PY++G+ S
Sbjct: 228 LLERRILLRSNKYTLLTLVSEAICHLIYPLRWQHVYIPIIFSSGVDYIDAPTPYMMGLHS 287
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 50.4 bits (115), Expect = 1e-05
Identities = 22/86 (25%), Positives = 47/86 (54%)
Query: 342 AITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVD 401
A+ E++I++ L+A+ +V ++ PF+WQ +P+ P L + L AP+P++ GV
Sbjct: 748 ALLEKQIVVICSNLGVLSAIVLSVMPMIRPFQWQSLLLPVLPRKLVDFLDAPVPFIAGVQ 807
Query: 402 SRFFDLYEPPPDVTCVDLDTNNITVC 427
+ D+ + +++D + + C
Sbjct: 808 HKPPDIKMKASSIVRINVDKDQVKAC 833
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 39.5 bits (88), Expect = 0.022
Identities = 22/83 (26%), Positives = 44/83 (53%), Gaps = 4/83 (4%)
Query: 342 AITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVD 401
A+ E++I+I L+A ++ L+ P++WQ IP+ P + + L AP+PY+
Sbjct: 616 ALLEKQIIIVCSNLGMLSASVLSIIPLIRPYQWQSLLIPVLPNDMMDFLDAPVPYI---- 671
Query: 402 SRFFDLYEPPPDVTCVDLDTNNI 424
++ D++ + +D + N I
Sbjct: 672 NKTSDVHSRLVNAVVIDANKNQI 694
>04_03_0018 -
9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 37.5 bits (83), Expect = 0.087
Identities = 41/165 (24%), Positives = 65/165 (39%), Gaps = 10/165 (6%)
Query: 381 LCPLGLAEVLHAPLPYLIGVDSRFFDLYEPPPDVTCVDLDTNNITVCESQRNNISIKLLP 440
L PL H+ +P G D F Y PPP++ C L T+ ++ + + L P
Sbjct: 749 LSPLQTKSNQHS-IPCSSGRDD-FASSYGPPPNIPCTSLRTSKVS------SLVHPSLRP 800
Query: 441 KRQVKALKQTLETLYGSIRPASPIHHSSRNRYNGEATTSLDRDFQKR--KKEQALELKIQ 498
R V +L Q+ Y I P SP H ++ SL +Q R K ++
Sbjct: 801 LRTVSSLSQSSFEEYLDISPPSPTFHEKHQQHFNLDPPSLIPPWQLRLAKTKENEIYPCT 860
Query: 499 EAFLRFMACTLQGYRSYLIPITKAPTVGTTDPDALFQMNEFLRSR 543
+FL + P P V T ++ Q++E+ + R
Sbjct: 861 LSFLPLSPSNKYAHHPPFPPPPPPPHVLCTQNNSRTQISEYEQGR 905
>02_04_0071 + 19457502-19458092,19458558-19458723,19458816-19459027,
19460103-19460596,19460682-19460730,19460886-19461194
Length = 606
Score = 35.9 bits (79), Expect = 0.27
Identities = 22/82 (26%), Positives = 36/82 (43%)
Query: 1185 LKSAATSMAKKFDEMKEVISANSTPVKGAIGTATSALGAFRADDDGVDASSEINSDELIG 1244
L++A ++ D++ V N VK A+ A+ ALG R V + +N
Sbjct: 57 LRAAVECQCQRIDDLARVTEGNGAWVKDAVDKASHALGDVRVPGQAVGGNGSVNGSAAKP 116
Query: 1245 GTGFRRASSEAELACSMERGSL 1266
R+ASS + A + R S+
Sbjct: 117 PPQRRKASSVEDEAWELLRESV 138
>05_03_0353 - 12856385-12857705,12858007-12858959
Length = 757
Score = 35.1 bits (77), Expect = 0.47
Identities = 15/44 (34%), Positives = 24/44 (54%)
Query: 736 KVPCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTY 779
KVP V + +++ H V A +++ +RAGLQP +TY
Sbjct: 580 KVPGTRVIFHMVLDGLAKHGLYVQATDVIYEFRRAGLQPTVMTY 623
>04_04_0150 - 23130038-23130281,23130550-23130762,23130856-23133155
Length = 918
Score = 34.7 bits (76), Expect = 0.61
Identities = 14/40 (35%), Positives = 26/40 (65%)
Query: 740 DEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTY 779
D V + VM+ G+H + A++L +M+R ++PN+LT+
Sbjct: 586 DVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTF 625
>10_01_0078 -
1012031-1012084,1012998-1013105,1013610-1013661,
1013926-1016603
Length = 963
Score = 33.1 bits (72), Expect = 1.9
Identities = 28/110 (25%), Positives = 41/110 (37%), Gaps = 1/110 (0%)
Query: 683 KASRSPEAWAKCLLGACYSLYFLTLPSRLMLNRGKEHATLRTAYELLERA-AKLKVPCDE 741
KA RS +A C L +Y S ++ L A ++ R V D
Sbjct: 164 KARRSLDASDMCQLMLIKGMYLDRELSTALIRVFCREGRLEPALDVFRRMKGDEHVQLDA 223
Query: 742 VCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTYGCYNRWVLEANW 791
Y M+ H +Q+ M G+QP+A TY RW ++ W
Sbjct: 224 YAYTTMIWGLFEHGRVDHGLQMYHEMIDRGIQPDAATYNVMIRWYCKSKW 273
>04_04_1167 +
31432731-31433769,31433893-31433941,31434363-31434427,
31435237-31435346,31436327-31436388,31438067-31438113,
31438148-31438272,31438651-31438764,31438852-31438979,
31439059-31439154,31439565-31439706,31439799-31439893,
31439966-31440095,31440179-31440323,31440430-31440656
Length = 857
Score = 33.1 bits (72), Expect = 1.9
Identities = 18/55 (32%), Positives = 30/55 (54%), Gaps = 2/55 (3%)
Query: 726 YELLERAAKLKVPCDEVCYRVMMQ-LCGIHSFPVMAVQLLFLMKRAGLQPNALTY 779
+E+ A++L V D C+ ++++ LC F A+ LL+ M + G PN TY
Sbjct: 162 HEVYLSASRLGVTLDTCCFNILVKGLCQFGKFGD-AISLLYEMPKQGCVPNVTTY 215
>10_08_0419 - 17783202-17784938
Length = 578
Score = 32.7 bits (71), Expect = 2.5
Identities = 20/57 (35%), Positives = 28/57 (49%)
Query: 723 RTAYELLERAAKLKVPCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTY 779
R+A LL+ + + D V Y V++ AV+LL M GL+PN LTY
Sbjct: 421 RSASGLLDEMKEKGIEADVVTYNVLIGALCCKGEVRKAVKLLDEMSEVGLEPNHLTY 477
>03_05_0992 + 29528126-29529931
Length = 601
Score = 32.7 bits (71), Expect = 2.5
Identities = 17/56 (30%), Positives = 28/56 (50%)
Query: 725 AYELLERAAKLKVPCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTYG 780
A+EL + P + V Y +MQ G A+++ M+R G P+++TYG
Sbjct: 249 AFELAREMERRGCPPNAVSYTTLMQGLGARGRVDEAMRVFVEMRRKGCAPDSVTYG 304
>01_01_0365 -
2859617-2859722,2860047-2860489,2862232-2862391,
2863431-2863516,2863648-2866272
Length = 1139
Score = 32.7 bits (71), Expect = 2.5
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 722 LRTAYELLERAAKLKVPCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTY 779
+ A+EL + D V Y + ++ C +H A+ + M R+G+QPN TY
Sbjct: 808 INKAFELWNEMLYKGLKPDVVAYNIFIRWCNVHGESDKALGIYTNMIRSGVQPNWDTY 865
>11_01_0060 + 453615-454030,454086-455862
Length = 730
Score = 31.5 bits (68), Expect = 5.7
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 3/76 (3%)
Query: 740 DEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTY-GCYNRWVLEANWPKDMPRL 798
D C+ M++ ++ F A++ + LM +GL P+ TY + A W D+ R
Sbjct: 142 DLTCWNAMLEGYVLNGFGHHAIRTVLLMHHSGLAPDRYTYISAVKACSISAQW--DLGRQ 199
Query: 799 VYIKNIYIRVESKSGL 814
++ I+ +ES + +
Sbjct: 200 LHCLVIHSMLESNTSV 215
>05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,
3413770-3413881,3414309-3414489,3414714-3414896,
3415133-3415315,3416062-3416131,3416413-3416522,
3416604-3416908,3417079-3417175,3417622-3417765,
3418217-3418303,3418387-3418473,3418566-3418706,
3418805-3418930,3419166-3419264,3419690-3419757,
3420275-3420341,3420713-3420883,3420959-3421048,
3421831-3421911,3423397-3423470,3423784-3423855,
3423925-3424017,3424138-3424204
Length = 1030
Score = 31.5 bits (68), Expect = 5.7
Identities = 41/142 (28%), Positives = 59/142 (41%), Gaps = 14/142 (9%)
Query: 1182 LSSLKSAAT---SMAKKFDEMKEVISANSTPVKGAIGTATSALGAFRADDDGVDASSEIN 1238
L+++ AAT S K E I A T + A+ T TS G RADDD +
Sbjct: 328 LANVLEAATWILSEPKFASETAADIIAVCTSLLDALPTITSPTG--RADDD-----DDTP 380
Query: 1239 SDELIGGTGFRRASSEAELACSMERGSLATLISHL-PDNLYPQTSAPVKPESVGVSVHMS 1297
D++I G A E ++ +++ L L++ L + S P P + V S
Sbjct: 381 MDDVINGLD---ADLEKQITAAIDSRLLQHLVNALFRGTISTDYSYPTGPSDIEVEAVGS 437
Query: 1298 SCSQCHQCLALLYDEDIMAGWA 1319
C+ H L E IM G A
Sbjct: 438 ICAFLHVTFNTLPAERIMTGLA 459
>02_01_0424 - 3097245-3099377
Length = 710
Score = 31.5 bits (68), Expect = 5.7
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 7/73 (9%)
Query: 1125 NSFQDDPPEQLGKLHRSETVP------AGTVSSSLVSLGNTLKLNFGPTSMAGKKSNELL 1178
N F + P+ +GKL R E + AG ++ ++ S N LN G + +G + ++
Sbjct: 279 NMFSGNIPDSIGKLKRLEEIHLHHNSMAGELTPAIGSCTNLKALNLGSNNFSG-ELGKVN 337
Query: 1179 QSGLSSLKSAATS 1191
S LSSLKS S
Sbjct: 338 FSKLSSLKSLHVS 350
>11_06_0621 +
25587476-25587604,25588230-25588423,25588800-25588874,
25589434-25591852
Length = 938
Score = 31.1 bits (67), Expect = 7.6
Identities = 17/59 (28%), Positives = 27/59 (45%)
Query: 722 LRTAYELLERAAKLKVPCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTYG 780
++ A ++ E K + D V Y ++ + LL M GL+PN+LTYG
Sbjct: 568 MQNAQQVFEEMLKANIEPDIVTYNILASGFCKSGLVMEVFDLLDRMADQGLEPNSLTYG 626
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.319 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 42,855,666
Number of Sequences: 37544
Number of extensions: 1716707
Number of successful extensions: 4422
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 4396
Number of HSP's gapped (non-prelim): 33
length of query: 1604
length of database: 14,793,348
effective HSP length: 92
effective length of query: 1512
effective length of database: 11,339,300
effective search space: 17145021600
effective search space used: 17145021600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 67 (31.1 bits)
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