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Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001510-TA|BGIBMGA001510-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR005113|uDENN, IPR001194|DENN, IPR005112|dDENN,
IPR002885|Pentatricopeptide repeat
         (1604 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38)                 196   1e-49
SB_24326| Best HMM Match : DENN (HMM E-Value=0)                        58   6e-08
SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)                55   5e-07
SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)                 48   5e-05
SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)                  46   3e-04
SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)                41   0.009
SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)              35   0.46 
SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.46 
SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   1.1  
SB_20256| Best HMM Match : RCSD (HMM E-Value=0.41)                     32   3.3  
SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35)                  32   3.3  
SB_7954| Best HMM Match : Myosin_tail_2 (HMM E-Value=1e-22)            31   5.7  
SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   7.6  
SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           31   7.6  
SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)              31   7.6  
SB_40536| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00014)       31   7.6  
SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   7.6  
SB_656| Best HMM Match : Pico_P2B (HMM E-Value=7.8)                    31   7.6  

>SB_26794| Best HMM Match : DENN (HMM E-Value=1.4e-38)
          Length = 595

 Score =  196 bits (478), Expect = 1e-49
 Identities = 97/213 (45%), Positives = 132/213 (61%), Gaps = 20/213 (9%)

Query: 16  VVFPTLGETVPDGYELVETTPTGLPADLNHGSMRSPECFLYLRRGRERPPLVDIGVMYDG 75
           V+F +LGE  P GYE +E +P G PADLNHGS+R P CFL  +RG ++PPL DIGV+Y+G
Sbjct: 73  VIFKSLGERPPPGYEWIEKSPAGFPADLNHGSIRQPSCFLCYKRGSDKPPLTDIGVLYEG 132

Query: 76  KERLMADAEMVLESSGGRVANVNNS-AAKTFITYRRAHPGAPCNALXXXXXXXXXXSKGE 134
           K+RLM+  +++  +  GR ANVNNS  ++T+ITYRRA       +L              
Sbjct: 133 KDRLMSGCDIITNTPYGRPANVNNSGGSRTYITYRRASQQMAHTSLAVT----------- 181

Query: 135 CPPHAFCMIAKNLNKGLMGSDVFLCYKKSMNRPPLISYKPDVLFRYPVTDRRSLAFPPSV 194
                 C+I  +     +GSDV+LCY+KS++R   I+Y  D+L R+P  D      P +V
Sbjct: 182 ----EICVIVAS----KVGSDVYLCYRKSLSRAKCITYHADILSRFPEKDYEGFPLPEAV 233

Query: 195 PLFCLPMGATLELWPNNAASPKPVFSTFVLTVA 227
           P+FCLP+GA +E WP     P P+FSTFVLT A
Sbjct: 234 PMFCLPLGAIIECWPEKCQHPLPLFSTFVLTGA 266



 Score =  144 bits (350), Expect = 4e-34
 Identities = 71/151 (47%), Positives = 97/151 (64%), Gaps = 10/151 (6%)

Query: 271 HVVKSVCLLSRWPFSDTFERWLLYILLSPSNPSDRVIVTRRDDQPLVRSGASFRQXXXXX 330
           H  K +C+LS WPF + F+++L  +         R+ V+ +  Q  + SGAS+       
Sbjct: 280 HTNKCICILSHWPFFEAFKKFLSQLY--------RISVSAQ--QIPIESGASYSAMLRHL 329

Query: 331 XXXXXXXXXXXAITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVL 390
                       +TE KILIHSLRP  LT+V+EA++++LFPF WQCPYIPLCP+ L +VL
Sbjct: 330 GPDNCLLLFYLILTEHKILIHSLRPALLTSVAEALTNVLFPFTWQCPYIPLCPVALNDVL 389

Query: 391 HAPLPYLIGVDSRFFDLYEPPPDVTCVDLDT 421
            AP P++IG+DSR+FD Y+PP DVT VDLDT
Sbjct: 390 CAPCPFIIGIDSRYFDQYDPPDDVTSVDLDT 420



 Score = 81.4 bits (192), Expect = 5e-15
 Identities = 41/82 (50%), Positives = 52/82 (63%)

Query: 508 TLQGYRSYLIPITKAPTVGTTDPDALFQMNEFLRSREKTQQRFFTLMMRTQMFTRFIEES 567
           T+   +SYL PIT  PT  T D  +LF +  FL+SR  + Q+FF  +  TQMF+RFIE+ 
Sbjct: 420 TIMISQSYLKPITSRPTQETCDVTSLFDLQGFLKSRPSSHQKFFQQLTITQMFSRFIEQR 479

Query: 568 SFVYDADQGLTFFDECIEKIAS 589
           SFV   D  L FFDEC EK+ S
Sbjct: 480 SFVTSQDALLAFFDECQEKLDS 501


>SB_24326| Best HMM Match : DENN (HMM E-Value=0)
          Length = 1281

 Score = 58.0 bits (134), Expect = 6e-08
 Identities = 66/241 (27%), Positives = 114/241 (47%), Gaps = 29/241 (12%)

Query: 343 ITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLA---EVLHAPLPYLIG 399
           + EQK++I S   + LT    A++ LL+P ++  P IPL P  +A   ++L AP PY+IG
Sbjct: 272 LLEQKVVIQSRDYNALTMSVIALTRLLYPLEYMFPIIPLLPTCMANAEQLLLAPTPYVIG 331

Query: 400 VDSRFFDL----YEPPPDVTCVDLDTNNITVCES---------QRNNISIKLLPKRQVKA 446
           V + FF      ++ P D+   DLD++ +TV  S         +   + I+ L K  ++A
Sbjct: 332 VPASFFRYKSKDFQIPGDLWVFDLDSSKMTVPMSADELPDLPEEEGQVLIRRL-KMALQA 390

Query: 447 LKQTLETLYGSIRPASPIHHSSRNRYNGEATTSLDRDFQKRKKEQALELKIQEAFLR-FM 505
           L    +T+ G++  A+P      N  +G+A  S++          ++++ ++ A +  FM
Sbjct: 391 LSMPPQTV-GNLENAAPDGLLPDNT-SGDA--SIEEHMVFGNDVDSVDVAVRVAIVNFFM 446

Query: 506 ACT-LQGYRSYLIPITKAPTVGTTDPDALFQMNEFLRSREKTQQRFFTLMMRTQMFTRFI 564
           + T L G + +   +   P      P    Q   FL+SR K    F   +  +Q    F 
Sbjct: 447 SPTVLCGLQEHTRTLRLFPR-----PVVALQKGPFLKSRPKPSD-FVAALAESQSVEYFA 500

Query: 565 E 565
           E
Sbjct: 501 E 501



 Score = 34.7 bits (76), Expect = 0.61
 Identities = 32/128 (25%), Positives = 54/128 (42%), Gaps = 10/128 (7%)

Query: 174 PDVLFRYPVTDRRSLAFPPSVPLFCLPMGATLELWPNNAASPKPVFSTFVLTVADA-TEK 232
           P +L R+P  D      PP V  FC P         +   S +   ++F+ T+ D  T K
Sbjct: 33  PRLLRRFPEKDHDDFPLPPDVVFFCQPEACNT---VSKKFSLREA-NSFIFTLTDKDTNK 88

Query: 233 V-YGSAVTFYESYPYSELTETQMELLGWRANVSQNTHSVHV---VKSVCLLSRWPFSDTF 288
           V YG  +  Y         + Q  +   +   S++ +   +   + S+C++S   F  TF
Sbjct: 89  VRYGVCMNIYRPCSQFHFRDDQDGIKDGKRKRSRSKNKREICMTLTSICIVSHHSFFATF 148

Query: 289 ERWLLYIL 296
            R  L++L
Sbjct: 149 -RECLFVL 155


>SB_20376| Best HMM Match : zf-piccolo (HMM E-Value=5.3)
          Length = 515

 Score = 54.8 bits (126), Expect = 5e-07
 Identities = 28/90 (31%), Positives = 48/90 (53%), Gaps = 22/90 (24%)

Query: 1366 QTETLTVPYLNPLVLRKEFESVLGREGDSCLIESEFVESHPIVYWNL------------- 1412
            + +++TV Y++PLVLRKE E++L  +GD+ L   + V    I++WN+             
Sbjct: 7    ERDSITVAYVSPLVLRKELENMLDNDGDAALQNPDIVHQKDIIFWNMAKILAYKSAFCLR 66

Query: 1413 ---------VWFLERANIESHLPDLLCPNF 1433
                     +W  +R  + SHLP+L+ PN+
Sbjct: 67   GSHRCFVSQMWIFKRLELPSHLPELILPNY 96


>SB_59772| Best HMM Match : dDENN (HMM E-Value=1.6e-24)
          Length = 423

 Score = 48.4 bits (110), Expect = 5e-05
 Identities = 37/131 (28%), Positives = 64/131 (48%), Gaps = 13/131 (9%)

Query: 361 VSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGV---DSRFFDLYEPPPDVTCV 417
           V+E V +L+FPF WQ  Y+P+ P  L   L AP+P+++G+      F    + P + +  
Sbjct: 8   VAEGVVTLIFPFIWQHVYVPILPAALQHFLDAPVPFIMGLYCASEDFKANLQLPSEASLC 67

Query: 418 DLDTNNITVCESQRNNISIKLLPKRQ--VKALKQTLETL-YGSIRPASPIHHSSRNRYNG 474
            +D +N  V   +     +   P +Q  ++ L +T+E     S    +P+  SS +R + 
Sbjct: 68  LVDIDNCKVLSPE----DLPEFPNKQDLIEELLETIEKFNIASQESNNPL--SSNSRCSS 121

Query: 475 EATTSLDRDFQ 485
           E   SLD   +
Sbjct: 122 EG-NSLDNSLE 131


>SB_7895| Best HMM Match : uDENN (HMM E-Value=5.7e-25)
          Length = 945

 Score = 45.6 bits (103), Expect = 3e-04
 Identities = 23/62 (37%), Positives = 35/62 (56%)

Query: 345 EQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVDSRF 404
           + KIL  S     LT V+ A+ +L++P K+   YIP+ P  L + L AP P ++GV   +
Sbjct: 249 KNKILFISSSFVQLTTVTRAMLALMYPLKFSYVYIPILPAALLDFLRAPTPTIMGVHEIY 308

Query: 405 FD 406
            D
Sbjct: 309 KD 310



 Score = 44.8 bits (101), Expect = 6e-04
 Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 6/72 (8%)

Query: 173 KPDVLFRYPVTDRRSLAFPPSVPLFCLPMGATLELWPNNAASPKPVFSTFVLTVADATEK 232
           K  VL R+P  DR+ +AFP  + LFC P G     W  +       F   VLT  +   K
Sbjct: 24  KGKVLQRFPPQDRKDVAFPEGIELFCQPTG-----WKTSYYCRPQTFFVSVLTDMEGDHK 78

Query: 233 VYGSAVTFYESY 244
            Y +  TFYE Y
Sbjct: 79  -YLACFTFYEPY 89


>SB_702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1396

 Score = 40.7 bits (91), Expect = 0.009
 Identities = 48/184 (26%), Positives = 76/184 (41%), Gaps = 20/184 (10%)

Query: 963  VPSNPDLSSSTRPRSNSLGNDEPDSPITVSDKRQTIHVSPDSPSDLRILTRSESFAG-DA 1021
            V S+P  + S RPR  S+ ND                +SP +P ++  +  SES  G D 
Sbjct: 1022 VLSSPSRTRSARPRRTSMNND-------------LCGISP-APINILKVDDSESSTGRDT 1067

Query: 1022 QIVQNLQRLSFTGISNAKTKCSRAL-SFPEESDKDVDVETLKTSKASPLRVSPRTPVLSD 1080
            ++V++ +R + +   +  TK  R   S    S K+  +      + SP+R + RT + SD
Sbjct: 1068 RLVRSARRNN-SDTDSVPTKLQRVSESLNSSSSKEYKLHNPSDFEDSPVRETRRTRIRSD 1126

Query: 1081 DPLGALSVPPVPDEXXXXXXXXXXXXXXXKHELSVSPKLFHRRSNSFQDD-PPEQLGKLH 1139
            DP      PP   +                 +   SP    RR+    DD P E LG   
Sbjct: 1127 DP--PYGSPPAKRKPELEPSDRVEVMKESPLDFENSPARETRRTRLRSDDLPSENLGTRR 1184

Query: 1140 RSET 1143
            ++E+
Sbjct: 1185 KTES 1188


>SB_14165| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1837

 Score = 35.1 bits (77), Expect = 0.46
 Identities = 25/100 (25%), Positives = 46/100 (46%), Gaps = 5/100 (5%)

Query: 995  RQTIHVSPDSPSDLRILTRSESFAGDAQIVQNLQRLSFTGISNAKTKCSRALSFPEESDK 1054
            ++T+  SP  P+  R +   E+++  +   +NL+  +     + KT C+      + S  
Sbjct: 432  KRTLRTSPAKPNATRTINSPETYSNASLFYRNLE-ATLKEYKHGKTTCNIRRLMRKNSS- 489

Query: 1055 DVDVETLKTSKASPLRVSPRTPVLSDDPLGALSVPPVPDE 1094
              +V T+K  K  P   S R  +L  DP  A+ V  +P +
Sbjct: 490  --NVATIKDGKLFPFDNSMRPNLLCKDP-AAICVTLIPSD 526


>SB_1817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1300

 Score = 35.1 bits (77), Expect = 0.46
 Identities = 31/119 (26%), Positives = 48/119 (40%), Gaps = 5/119 (4%)

Query: 963  VPSNPDLSSSTRPRSNSLGNDEPDSPI---TVSDKRQTIHVSPDSPSDLRILTRSESFAG 1019
            V   P L    RPR+NS    +   P+    VS  ++   V    P   R     ES   
Sbjct: 201  VSVEPGLPQLPRPRTNSSNKKKSAPPLPKHVVSPVKRPNKVKAPPPIPPRASESIESKES 260

Query: 1020 DAQIVQNLQRLSF-TGISNAKTKCSRALSFPEESDKDVDVETLKTSKASPL-RVSPRTP 1076
            D+ ++ N Q     +G+SN +T C+   S P+    + +  +     + PL R  P  P
Sbjct: 261  DSNVIVNDQFEEIVSGVSNVETSCTSTPSPPQGEVVENETRSGSPKSSRPLARSRPARP 319


>SB_37011| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1829

 Score = 33.9 bits (74), Expect = 1.1
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 4/63 (6%)

Query: 228 DATEKVYGSAVTFYESY-PYSELTETQMELLGWRANVSQNTHSVHVVKSVCLLSRWPFSD 286
           D TE  +   +  YE Y   +++TE + ++    ANV    +  H++KS+CLL + P   
Sbjct: 598 DETEHNWTEFIEIYEHYFAANKITEDKFKVSILCANVGPKAY--HIIKSLCLLEK-PADK 654

Query: 287 TFE 289
           TFE
Sbjct: 655 TFE 657


>SB_20256| Best HMM Match : RCSD (HMM E-Value=0.41)
          Length = 247

 Score = 32.3 bits (70), Expect = 3.3
 Identities = 35/108 (32%), Positives = 48/108 (44%), Gaps = 7/108 (6%)

Query: 961  SGVPSNPDLSSSTRPRSNSLGNDEPDSPITVSDKRQTIHVSPDSPSDLRILTRSESFAGD 1020
            SG  S   LSSS    ++S  +  PD P + S +RQ +HVSP +PS     + S S    
Sbjct: 21   SGFSSKTPLSSSPVAANSSSSSKRPDVPQSSSRQRQ-VHVSP-APSSTSSSSASTSANSS 78

Query: 1021 --AQIVQNLQRLSFTGISNAKTKCSRALSFPEESDKDVDVETLKTSKA 1066
              + I+  L   S   I + K K  +A S  +  DK       KT  A
Sbjct: 79   LTSPIMVALNAKSDMTIKSIKNK--KAAS-DKNGDKKTSTSLKKTQHA 123


>SB_9796| Best HMM Match : uDENN (HMM E-Value=1.1e-35)
          Length = 300

 Score = 32.3 bits (70), Expect = 3.3
 Identities = 24/86 (27%), Positives = 36/86 (41%), Gaps = 4/86 (4%)

Query: 171 SYKPDVLFRYPVTDRRSLAFPPSVPLFCLPMGATLELWPNNAASPKPVFSTFVLTVADAT 230
           SYK  VL  +P     +     +V +   P G T       A    P   +F++T  D +
Sbjct: 43  SYKAKVLSHFPANVDWNPFDEDAVRMLSFPHGLTFR---TQAEPHSPSLHSFLITREDGS 99

Query: 231 EKVYGSAVTFYESYPYSELTETQMEL 256
            +VYG A+T YE     E+ +    L
Sbjct: 100 -RVYGCALTVYEVVDEEEICKAMQVL 124


>SB_7954| Best HMM Match : Myosin_tail_2 (HMM E-Value=1e-22)
          Length = 374

 Score = 31.5 bits (68), Expect = 5.7
 Identities = 24/68 (35%), Positives = 32/68 (47%), Gaps = 8/68 (11%)

Query: 4   FSGGGT---IYSKQGVVFPTLGETVPDGYELVETTPTGLPADLNHG--SMRSPECFLYLR 58
           + GGGT    +SK G+ F T+    P G  L  + P GLP D   G  +  SP      R
Sbjct: 241 WGGGGTRLLAFSKSGIDFTTVK---PSGKTLNISVPAGLPPDTRPGRSAGSSPISHTEQR 297

Query: 59  RGRERPPL 66
             R +PP+
Sbjct: 298 LERPQPPI 305


>SB_50655| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2033

 Score = 31.1 bits (67), Expect = 7.6
 Identities = 18/66 (27%), Positives = 40/66 (60%), Gaps = 7/66 (10%)

Query: 1148 TVSSSLVSLGNTLKLNFGPTSMAGKKSNELLQSGLSSLKSAATSMAKKFDEMKEVISANS 1207
            T+ S++++LGN +K         G     ++ +  +SLK+AA  +  K D+++EV+++ +
Sbjct: 263  TILSAVLTLGN-MKFE------EGDHEGAVIANAHASLKTAAKLLGVKSDKLEEVLTSTT 315

Query: 1208 TPVKGA 1213
            T ++G+
Sbjct: 316  TVMRGS 321


>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 31.1 bits (67), Expect = 7.6
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)

Query: 1037 NAKTKCSRALSFPEESDKDVDVETLKTSKASPLRVSPRTPVLSDDPLGALSVPP 1090
            NA+ K  RA  FP E  + +D+E   +++ +P  V    P    DP  A  + P
Sbjct: 1333 NAEVK--RAADFPNEPQQSMDIEYGNSTEVTPTNVLSEEPGCQKDPQTANKLAP 1384


>SB_40651| Best HMM Match : Neuromodulin (HMM E-Value=1.2)
          Length = 1156

 Score = 31.1 bits (67), Expect = 7.6
 Identities = 28/110 (25%), Positives = 45/110 (40%), Gaps = 5/110 (4%)

Query: 983  DEPDSPITVSDKRQTIHVSPDSPSDLRILTRSESFAGDAQIVQNLQRLSFTGISNAKTKC 1042
            ++ D  IT   + Q IH+S +S    R +T +            L+ ++   + + +   
Sbjct: 711  EDVDKVITTDSEPQIIHLSLESSPGSRDVTTTSEKRKSRDKYPKLEYITSLDLEDIEVLK 770

Query: 1043 SRALSFPEESDKDVDVETLKTSKASPLRVSPRT---PVLSDDPLGALSVP 1089
            S     PE   +DV   TL  S  + L  SP+    PV  D   GA  +P
Sbjct: 771  SPDKQRPELQRQDVVTRTLTQSAVNELHTSPQNGAEPV--DYKKGAKKIP 818


>SB_40536| Best HMM Match : Peptidase_A16_N (HMM E-Value=0.00014)
          Length = 672

 Score = 31.1 bits (67), Expect = 7.6
 Identities = 20/76 (26%), Positives = 35/76 (46%)

Query: 1252 SSEAELACSMERGSLATLISHLPDNLYPQTSAPVKPESVGVSVHMSSCSQCHQCLALLYD 1311
            SS A L+      ++ +L+S LP +L  +      PE V  S+H+ S +   Q + +   
Sbjct: 409  SSLAYLSVLDHPHNIQSLVSKLPFSLQDRWRREANPEDVLQSIHVRSANGTTQPVYMTMT 468

Query: 1312 EDIMAGWAADDSNLNT 1327
             D+    A  D++  T
Sbjct: 469  SDLQENVATQDASAQT 484


>SB_35730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 266

 Score = 31.1 bits (67), Expect = 7.6
 Identities = 34/187 (18%), Positives = 70/187 (37%)

Query: 1114 SVSPKLFHRRSNSFQDDPPEQLGKLHRSETVPAGTVSSSLVSLGNTLKLNFGPTSMAGKK 1173
            S S +     +NS              S +  + + SSS  S  N+   +   +S +   
Sbjct: 46   SSSSRSSSNSNNSSNSSSSSSSSSNSSSSSSSSSSSSSSSSSSSNSSSSSSSSSSSSSSS 105

Query: 1174 SNELLQSGLSSLKSAATSMAKKFDEMKEVISANSTPVKGAIGTATSALGAFRADDDGVDA 1233
            S+    S  SS  S+++S +          S++S+    +  +++S+  +  +     ++
Sbjct: 106  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNS 165

Query: 1234 SSEINSDELIGGTGFRRASSEAELACSMERGSLATLISHLPDNLYPQTSAPVKPESVGVS 1293
            SS  +S      +    +SS +  + S    S ++  S    +    +S+     S   S
Sbjct: 166  SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSNSSSSSSS 225

Query: 1294 VHMSSCS 1300
               SS S
Sbjct: 226  SSSSSSS 232


>SB_656| Best HMM Match : Pico_P2B (HMM E-Value=7.8)
          Length = 146

 Score = 31.1 bits (67), Expect = 7.6
 Identities = 13/24 (54%), Positives = 17/24 (70%)

Query: 601 NASERTVFLLPPDPPDPQKTYTYE 624
           +AS R+VF+L    PDPQK Y Y+
Sbjct: 106 SASTRSVFILIRSVPDPQKRYEYD 129


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.319    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 48,564,502
Number of Sequences: 59808
Number of extensions: 1941404
Number of successful extensions: 4299
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 4265
Number of HSP's gapped (non-prelim): 39
length of query: 1604
length of database: 16,821,457
effective HSP length: 92
effective length of query: 1512
effective length of database: 11,319,121
effective search space: 17114510952
effective search space used: 17114510952
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)

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