GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001510-TA|BGIBMGA001510-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR005113|uDENN, IPR001194|DENN, IPR005112|dDENN,
IPR002885|Pentatricopeptide repeat
         (1604 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA topoi...    26   9.2  

>AJ439353-8|CAD27930.1| 1039|Anopheles gambiae putative DNA
            topoisomerase protein.
          Length = 1039

 Score = 25.8 bits (54), Expect = 9.2
 Identities = 23/87 (26%), Positives = 36/87 (41%), Gaps = 3/87 (3%)

Query: 1144 VPAGTVSSSLVSLGNTLKLNFGPTSMAGKKSNELLQSGLSSLKSAATSMAKKFDEMKEVI 1203
            V  G    S    G+T+  N   +S +GKKS+    SG +S K   T    +  +    +
Sbjct: 947  VGGGGGGGSAGGAGSTISNNTNSSSSSGKKSS---HSGTNSSKRKKTVSPGEKKDRGGPM 1003

Query: 1204 SANSTPVKGAIGTATSALGAFRADDDG 1230
            +A   P   AI    +  GA  +  +G
Sbjct: 1004 AAGGPPSATAISYGLTMAGAAGSVSNG 1030


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.319    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,485,434
Number of Sequences: 2123
Number of extensions: 58032
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 79
Number of HSP's gapped (non-prelim): 2
length of query: 1604
length of database: 516,269
effective HSP length: 73
effective length of query: 1531
effective length of database: 361,290
effective search space: 553134990
effective search space used: 553134990
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)