Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001510-TA|BGIBMGA001510-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR005113|uDENN, IPR001194|DENN, IPR005112|dDENN,
IPR002885|Pentatricopeptide repeat
(1604 letters)
Database: celegans
27,539 sequences; 12,573,161 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical ... 445 e-124
U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of pr... 61 7e-09
U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion... 61 7e-09
U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion... 61 7e-09
Z50028-5|CAA90338.1| 661|Caenorhabditis elegans Hypothetical pr... 52 4e-06
AL032624-4|CAA21522.1| 661|Caenorhabditis elegans Hypothetical ... 52 4e-06
U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical pr... 50 1e-05
AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm (myotubu... 45 4e-04
U42848-1|AAA83606.2| 345|Caenorhabditis elegans Hypothetical pr... 33 1.3
Z70270-7|CAH04652.1| 175|Caenorhabditis elegans Hypothetical pr... 33 1.7
U58751-3|AAN84880.1| 667|Caenorhabditis elegans Pctaire class c... 33 2.2
U58751-2|AAL00852.1| 700|Caenorhabditis elegans Pctaire class c... 33 2.2
U58751-1|AAB00656.1| 577|Caenorhabditis elegans Pctaire class c... 33 2.2
AF129110-1|AAD37120.1| 577|Caenorhabditis elegans Pct-1 protein. 33 2.2
AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical ... 32 2.9
Z29095-6|CAA82348.3| 444|Caenorhabditis elegans Hypothetical pr... 31 8.9
U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical pr... 31 8.9
>AF100657-2|AAC68958.2| 1635|Caenorhabditis elegans Hypothetical
protein F52C12.4 protein.
Length = 1635
Score = 445 bits (1097), Expect = e-124
Identities = 265/664 (39%), Positives = 374/664 (56%), Gaps = 68/664 (10%)
Query: 16 VVFPTLGETVPDGYELVETTPTGLPADLNHGSMRSPECFLYLRRGRERPPLVDIGVMYDG 75
V+FP+LGE PDG++++E+T G PADLNHGS+ FL +RG + PLVDIG++ +G
Sbjct: 77 VIFPSLGEKPPDGFDVIESTTLGYPADLNHGSIGQKSVFLCYKRGYNKLPLVDIGILDEG 136
Query: 76 K-ERLMADAEMVLESSGGRVANVNNSAAKTFITYRRAHPGAPCNALXXXXXXXXXXSKGE 134
+ ++ M D+ +V + GR A+VNN++ ++TYRRA P + + +KGE
Sbjct: 137 RGDKPMIDSNVVQTTPFGRCASVNNASQGIYLTYRRAPPNSSQSQFVVTDIKVILANKGE 196
Query: 135 CPPHAFCMIAKNLNKGLMGSDVFLCYKKSMNRPPLISYKPDVLFRYPVTDR----RSLAF 190
PPH + I KNLNKGL+GSDVF+CYKKS ++YKP VL +P +D
Sbjct: 197 IPPHTYYKITKNLNKGLVGSDVFICYKKSQGTAKRLAYKPAVLDYFPRSDHSGEMEDFKL 256
Query: 191 PPSVPLFCLPMGATLELWPNNAASPKPVFSTFVLTVADATEKVYGSAVTFYESYPYSELT 250
+V +FCLPMGA +E WP A P FSTFVLT + T K YGSAVTFYE Y +L+
Sbjct: 257 AQNVAMFCLPMGALIECWPTKCAPPDRSFSTFVLTDENGT-KFYGSAVTFYEKYT-KQLS 314
Query: 251 ETQMELLGWRANV--------SQNTHSVHVV----KSVCLLSRWPFSDTF---------- 288
E Q+E L +++ S N + ++ S+CL+SR+PF ++F
Sbjct: 315 EDQLEQLDLKSDEGGTVEDSGSNNDPADDILFYKNVSICLISRFPFFNSFKRFLFFLHRM 374
Query: 289 ------------ERWLLYILLSPSNPSDR------------VIVTRRDDQPLVRSGASFR 324
ER++ +++ S P+ R + DD L +GA
Sbjct: 375 SSTPSCSHPVPIERYISHLMYEVSFPTPRRPRVFMQLGAENISFDSHDDSQLPLNGAQLI 434
Query: 325 QXXXXXXXXXXXXXXXXAITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPL 384
A+ EQKILIHSLRP L AV+E+V +L+FPF WQCPYIP CPL
Sbjct: 435 DTLKYLGSENLMYLMLLALLEQKILIHSLRPWMLAAVAESVCALMFPFHWQCPYIPQCPL 494
Query: 385 GLAEVLHAPLPYLIGVDSRFFDLYE-PPPDVTCVDLDTNNITVCESQRNNISIKLLPKRQ 443
GLA VLHAPLP++ GVDSR+F+LYE PP DVTC DLDT+ I+ + R +LPK+
Sbjct: 495 GLAGVLHAPLPFIAGVDSRYFELYEDPPDDVTCFDLDTSTISF-STVRATFKTSMLPKKP 553
Query: 444 VKALKQTLETLYGSIRPASPIHHSSRNRYNGEATTSLDRDFQKRKKEQALELKIQEAFLR 503
K LK LE ++G ++ +S+ ++ +G +D+D K+++ + E +I +AFL+
Sbjct: 554 AKQLKSALEDIFGKLQKQD---YSTNSKSDG-GFIPVDQDLVKQRQRREFENEIHDAFLK 609
Query: 504 FMACTLQGYRSYLIPITKAP-TVGTTDPDALFQMNEFLRSREKTQQRFFTLMMRTQMFTR 562
F+A ++GY+++L PI AP T TD LF ++ FLRSR+++ F+ TQ F R
Sbjct: 610 FIASIMKGYQAFLRPIKGAPMTEHATDTGNLFDLDGFLRSRDRSSADFYKRFSETQSFMR 669
Query: 563 FIEESSFVYDADQGLTFFDECIEKIASGEERLLGMDTTNASERTVFLLPPDPPDPQKTY- 621
FIEE SFV D + FFD+CI K+ S E G D + V LL PD T+
Sbjct: 670 FIEERSFVSDKNTYNAFFDDCIAKLTSAVED--GRDISG-----VQLLEPDTSHSHTTFK 722
Query: 622 TYEK 625
Y K
Sbjct: 723 NYNK 726
Score = 105 bits (253), Expect = 2e-22
Identities = 56/128 (43%), Positives = 84/128 (65%), Gaps = 3/128 (2%)
Query: 667 AKRTKHEVAAAQRLARKASRS-PEAWAKCLLGACYSLYFLTLPSRLMLNRGKEHATLRTA 725
A RTK E ++ A A ++ P W+K LL YSL+F+ L S L K+ LR A
Sbjct: 916 AVRTKPETRSSLLAATNAVKTNPLHWSKTLLFYSYSLWFMQLDSLLTAAPNKKKI-LRLA 974
Query: 726 YELLERAAKLKV-PCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTYGCYNR 784
+ +L+R K ++ P D+VCYR++++LCG +S P MAV+++ M+RAGL+ NA+TYG Y+R
Sbjct: 975 FNVLDRMEKTEIFPLDQVCYRILIELCGKYSEPEMAVKVMRAMQRAGLEQNAVTYGIYHR 1034
Query: 785 WVLEANWP 792
V++A WP
Sbjct: 1035 AVMDATWP 1042
Score = 77.0 bits (181), Expect = 1e-13
Identities = 58/195 (29%), Positives = 100/195 (51%), Gaps = 34/195 (17%)
Query: 1261 MERGSLATLISHLPDNL--YPQTSAPVKPESVGVSVHMSSCSQCHQCLALLYDEDIMAGW 1318
+E+G + + D + +PQ SA + + V + + + C C ++YDE+IMAGW
Sbjct: 1330 VEKGQKSEENEEISDGIADFPQFSAKTPGK---LEVILCTATYCPSCRTMVYDEEIMAGW 1386
Query: 1319 AADDSNLNTRC----------------TACGRHTV--PLLTVK---VDALRPCPYCD--I 1355
DD NLNT C TA + +V P L ++ ++ ++ Y +
Sbjct: 1387 KVDDQNLNTICPHCSGSGTATDAVSNETAAIQESVFAPRLKIRMRWIEEMKSSWYQPGGL 1446
Query: 1356 KPHIMRTGQTQTET-----LTVPYLNPLVLRKEFESVLGREGDSCLIESEFVESHPIVYW 1410
+ + T + T T L V +++PLVLR+E E++L + D+ ES +HP+V+W
Sbjct: 1447 QETPISTPEKTTSTPSDIQLEVAFVSPLVLRRELETLLSTDKDAMRNES-LKTTHPVVFW 1505
Query: 1411 NLVWFLERANIESHL 1425
NL+++L R ++ SHL
Sbjct: 1506 NLIYYLRRLSLPSHL 1520
>U93842-1|AAB52421.1| 1409|Caenorhabditis elegans regulator of
presynaptic activity protein.
Length = 1409
Score = 60.9 bits (141), Expect = 7e-09
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 10/117 (8%)
Query: 342 AITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPL---GLAEVLHAPLPYLI 398
A+ E KI+I S + ++ ++ +LL+P ++ P IPL P ++L AP P+LI
Sbjct: 278 AMLEFKIVIQSRNYNAVSMCILSIVALLYPLEYMFPVIPLLPAYMPSAEQLLLAPTPFLI 337
Query: 399 GVDSRFF---DLYEPPPDVTCVDLDTNNITVCESQRNNISIKLLPKRQVKALKQTLE 452
GV S FF + E P DV VDLDTN C +++ I LP+ LK+ L+
Sbjct: 338 GVPSSFFHHRKIRELPSDVILVDLDTN----CLQVPDDLYIPDLPEPDATHLKERLK 390
Score = 59.7 bits (138), Expect = 2e-08
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 174 PDVLFRYPVTDRRSLAFPPSVPLFCLPMG-ATLELWPNNAASPKPVFSTFVLTVADATEK 232
P++L RYP D + P V +FC P G T A P F F+LT D+ +
Sbjct: 44 PEILRRYPTDDHKDFILPTDVTVFCQPEGCTTTSARLRKNARNDPQFFVFMLTEKDSAKV 103
Query: 233 VYGSAVTFYESYPYSELTETQMELLGWRANVSQNTHSVHVVKSVCLLSRWPFSDTFERWL 292
YG + FY+S+ + +++ + A+ + V + S+C +S PF F + L
Sbjct: 104 RYGICLNFYQSFDRRSTPKDEIKKVPDDAHHKKRDSHVSLT-SLCFISHHPFVSIFHQVL 162
Query: 293 LYI 295
L +
Sbjct: 163 LLL 165
>U49945-3|AAM51509.1| 1408|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform b protein.
Length = 1408
Score = 60.9 bits (141), Expect = 7e-09
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 10/117 (8%)
Query: 342 AITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPL---GLAEVLHAPLPYLI 398
A+ E KI+I S + ++ ++ +LL+P ++ P IPL P ++L AP P+LI
Sbjct: 278 AMLEFKIVIQSRNYNAVSMCILSIVALLYPLEYMFPVIPLLPAYMPSAEQLLLAPTPFLI 337
Query: 399 GVDSRFF---DLYEPPPDVTCVDLDTNNITVCESQRNNISIKLLPKRQVKALKQTLE 452
GV S FF + E P DV VDLDTN C +++ I LP+ LK+ L+
Sbjct: 338 GVPSSFFHHRKIRELPSDVILVDLDTN----CLQVPDDLYIPDLPEPDATHLKERLK 390
Score = 59.7 bits (138), Expect = 2e-08
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 174 PDVLFRYPVTDRRSLAFPPSVPLFCLPMG-ATLELWPNNAASPKPVFSTFVLTVADATEK 232
P++L RYP D + P V +FC P G T A P F F+LT D+ +
Sbjct: 44 PEILRRYPTDDHKDFILPTDVTVFCQPEGCTTTSARLRKNARNDPQFFVFMLTEKDSAKV 103
Query: 233 VYGSAVTFYESYPYSELTETQMELLGWRANVSQNTHSVHVVKSVCLLSRWPFSDTFERWL 292
YG + FY+S+ + +++ + A+ + V + S+C +S PF F + L
Sbjct: 104 RYGICLNFYQSFDRRSTPKDEIKKVPDDAHHKKRDSHVSLT-SLCFISHHPFVSIFHQVL 162
Query: 293 LYI 295
L +
Sbjct: 163 LLL 165
>U49945-2|AAC47926.1| 1409|Caenorhabditis elegans Aboc, expulsion
defective protein3, isoform a protein.
Length = 1409
Score = 60.9 bits (141), Expect = 7e-09
Identities = 42/117 (35%), Positives = 63/117 (53%), Gaps = 10/117 (8%)
Query: 342 AITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPL---GLAEVLHAPLPYLI 398
A+ E KI+I S + ++ ++ +LL+P ++ P IPL P ++L AP P+LI
Sbjct: 278 AMLEFKIVIQSRNYNAVSMCILSIVALLYPLEYMFPVIPLLPAYMPSAEQLLLAPTPFLI 337
Query: 399 GVDSRFF---DLYEPPPDVTCVDLDTNNITVCESQRNNISIKLLPKRQVKALKQTLE 452
GV S FF + E P DV VDLDTN C +++ I LP+ LK+ L+
Sbjct: 338 GVPSSFFHHRKIRELPSDVILVDLDTN----CLQVPDDLYIPDLPEPDATHLKERLK 390
Score = 59.7 bits (138), Expect = 2e-08
Identities = 35/123 (28%), Positives = 57/123 (46%), Gaps = 2/123 (1%)
Query: 174 PDVLFRYPVTDRRSLAFPPSVPLFCLPMG-ATLELWPNNAASPKPVFSTFVLTVADATEK 232
P++L RYP D + P V +FC P G T A P F F+LT D+ +
Sbjct: 44 PEILRRYPTDDHKDFILPTDVTVFCQPEGCTTTSARLRKNARNDPQFFVFMLTEKDSAKV 103
Query: 233 VYGSAVTFYESYPYSELTETQMELLGWRANVSQNTHSVHVVKSVCLLSRWPFSDTFERWL 292
YG + FY+S+ + +++ + A+ + V + S+C +S PF F + L
Sbjct: 104 RYGICLNFYQSFDRRSTPKDEIKKVPDDAHHKKRDSHVSLT-SLCFISHHPFVSIFHQVL 162
Query: 293 LYI 295
L +
Sbjct: 163 LLL 165
>Z50028-5|CAA90338.1| 661|Caenorhabditis elegans Hypothetical
protein F46F6.1a protein.
Length = 661
Score = 51.6 bits (118), Expect = 4e-06
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 343 ITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVDS 402
+ E++IL + +L++ AVS LL+P WQ +I + P L +++ AP+PYLIGV
Sbjct: 201 LKERRILFTGRKVGSLSSCLHAVSMLLYPMCWQSVFITILPESLVDMVMAPMPYLIGVPK 260
Query: 403 RFFD----LYEPPPDVTCVDLDTNNIT 425
+ +V VD+D +T
Sbjct: 261 TVLENARLNIRDIGEVVIVDIDEKTLT 287
>AL032624-4|CAA21522.1| 661|Caenorhabditis elegans Hypothetical
protein F46F6.1a protein.
Length = 661
Score = 51.6 bits (118), Expect = 4e-06
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 4/87 (4%)
Query: 343 ITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVDS 402
+ E++IL + +L++ AVS LL+P WQ +I + P L +++ AP+PYLIGV
Sbjct: 201 LKERRILFTGRKVGSLSSCLHAVSMLLYPMCWQSVFITILPESLVDMVMAPMPYLIGVPK 260
Query: 403 RFFD----LYEPPPDVTCVDLDTNNIT 425
+ +V VD+D +T
Sbjct: 261 TVLENARLNIRDIGEVVIVDIDEKTLT 287
>U50135-4|AAA93455.3| 1487|Caenorhabditis elegans Hypothetical
protein C52E12.4 protein.
Length = 1487
Score = 50.4 bits (115), Expect = 1e-05
Identities = 29/82 (35%), Positives = 46/82 (56%), Gaps = 5/82 (6%)
Query: 343 ITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIG--- 399
+ E +IL+ S L V E++ +L FPF+WQ Y P+ P + AP+PY++G
Sbjct: 301 LLEHQILLCSKDLSRLMTVCESLLALSFPFRWQMTYAPVLPYSKLDFFEAPVPYVMGWYY 360
Query: 400 VDSRFFDLYEPPPDVTCVDLDT 421
D+ +L++ +V VDLDT
Sbjct: 361 EDTVPEELFQ--SNVCVVDLDT 380
>AF098501-10|AAC67405.3| 1744|Caenorhabditis elegans Mtm
(myotubularin) family protein 5 protein.
Length = 1744
Score = 45.2 bits (102), Expect = 4e-04
Identities = 23/62 (37%), Positives = 38/62 (61%)
Query: 343 ITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVDS 402
+++ +I++ S L+ A+ SLL+PF++ + + P LAEVL +P P+LIGV S
Sbjct: 201 LSDCRIVLASSSLMRLSRCQNAILSLLYPFEYVHSCVTILPDSLAEVLESPTPFLIGVLS 260
Query: 403 RF 404
F
Sbjct: 261 EF 262
>U42848-1|AAA83606.2| 345|Caenorhabditis elegans Hypothetical protein
C31H1.2 protein.
Length = 345
Score = 33.5 bits (73), Expect = 1.3
Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Query: 1286 KPESVGVSVHMSSCSQCHQCLALLYDEDIMAGWAADDSNLNTRCTACGRHTVPLLTVKVD 1345
+P+ G V C + CL LY +D GW ++SN + + H VP K +
Sbjct: 108 RPKRDGYDVKTVCCCKSPNCLTTLY-KDSEIGWKIENSNESCAAASYDSHRVPRWIGKYE 166
Query: 1346 ALRP 1349
RP
Sbjct: 167 YDRP 170
>Z70270-7|CAH04652.1| 175|Caenorhabditis elegans Hypothetical protein
C53D6.10 protein.
Length = 175
Score = 33.1 bits (72), Expect = 1.7
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 8/111 (7%)
Query: 961 SGVPSNPDLSSSTRPRSNSLGNDEPDSPIT--VSDKRQTIHVSPDSPSDLRILTRSESFA 1018
S PS P+++ P + G P +P+ D ++ + V S D +I+ +
Sbjct: 28 SNAPSQPEINIPQFPNAQGTGAPPPPTPLANPTEDNKKAVSVKDSSKVDSKIVKAT---- 83
Query: 1019 GDAQIVQNLQRLSFTGISNAKTKCSRALSFPEESDKDVDVETLKTSKASPL 1069
GD + +N + S T N K K +++ + +ES E L T++ S L
Sbjct: 84 GDGKKKKN-GKSSETKTKN-KVKKNKSKASADESQMGSAEERLSTNRPSTL 132
>U58751-3|AAN84880.1| 667|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform c protein.
Length = 667
Score = 32.7 bits (71), Expect = 2.2
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 7 GGTIYSKQGVVFPTLGETVPDGYELVETTPTGLPADLNHGSMRSPECFLYLRRGRERPPL 66
GGT + G++F TLG PD + + PT P H + P C R L
Sbjct: 527 GGTPTEQLGLIFRTLGSPRPDRHPTICEKPTFYPYANRHYN-PDPLCRQIPRIDAHGFEL 585
Query: 67 VDIGVMYDGKERLMADAEMV 86
+ + Y+GK+R+ A AE V
Sbjct: 586 LMKFLQYEGKDRVSA-AEAV 604
>U58751-2|AAL00852.1| 700|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform b protein.
Length = 700
Score = 32.7 bits (71), Expect = 2.2
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 7 GGTIYSKQGVVFPTLGETVPDGYELVETTPTGLPADLNHGSMRSPECFLYLRRGRERPPL 66
GGT + G++F TLG PD + + PT P H + P C R L
Sbjct: 560 GGTPTEQLGLIFRTLGSPRPDRHPTICEKPTFYPYANRHYN-PDPLCRQIPRIDAHGFEL 618
Query: 67 VDIGVMYDGKERLMADAEMV 86
+ + Y+GK+R+ A AE V
Sbjct: 619 LMKFLQYEGKDRVSA-AEAV 637
>U58751-1|AAB00656.1| 577|Caenorhabditis elegans Pctaire class cell
cycle kinaseprotein 1, isoform a protein.
Length = 577
Score = 32.7 bits (71), Expect = 2.2
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 7 GGTIYSKQGVVFPTLGETVPDGYELVETTPTGLPADLNHGSMRSPECFLYLRRGRERPPL 66
GGT + G++F TLG PD + + PT P H + P C R L
Sbjct: 437 GGTPTEQLGLIFRTLGSPRPDRHPTICEKPTFYPYANRHYN-PDPLCRQIPRIDAHGFEL 495
Query: 67 VDIGVMYDGKERLMADAEMV 86
+ + Y+GK+R+ A AE V
Sbjct: 496 LMKFLQYEGKDRVSA-AEAV 514
>AF129110-1|AAD37120.1| 577|Caenorhabditis elegans Pct-1 protein.
Length = 577
Score = 32.7 bits (71), Expect = 2.2
Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
Query: 7 GGTIYSKQGVVFPTLGETVPDGYELVETTPTGLPADLNHGSMRSPECFLYLRRGRERPPL 66
GGT + G++F TLG PD + + PT P H + P C R L
Sbjct: 437 GGTPTEQLGLIFRTLGSPRPDRHPTICEKPTFYPYANRHYN-PDPLCRQIPRIDAHGFEL 495
Query: 67 VDIGVMYDGKERLMADAEMV 86
+ + Y+GK+R+ A AE V
Sbjct: 496 LMKFLQYEGKDRVSA-AEAV 514
>AL132949-7|CAB61080.1| 1168|Caenorhabditis elegans Hypothetical
protein Y53F4B.9 protein.
Length = 1168
Score = 32.3 bits (70), Expect = 2.9
Identities = 24/90 (26%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 1001 SPDSPSDLRILTRSESFAGDAQIVQNLQRLSFTGISNAKTKCSRALSFPEESDKDVDVET 1060
SP++P + ++ T F+ +V N + L + A+TK + S ++ V +
Sbjct: 554 SPEAPENGKLAT---IFSKSTPVVGNKKMLE---LKKAETKSTPPTS--QKPSSSGPVFS 605
Query: 1061 LKTSKASPLRVSPRTPVLSDDPLGALSVPP 1090
+ + K V+P+ LSD P+G++S PP
Sbjct: 606 IFSPKPVKPAVTPKVTTLSDSPMGSVSGPP 635
>Z29095-6|CAA82348.3| 444|Caenorhabditis elegans Hypothetical protein
R10E11.5 protein.
Length = 444
Score = 30.7 bits (66), Expect = 8.9
Identities = 19/83 (22%), Positives = 38/83 (45%), Gaps = 1/83 (1%)
Query: 1129 DDPPEQLGKLHRSETVPAGTVSSSLVSLGNTLKLNFGPTSMAGKKS-NELLQSGLSSLKS 1187
DD ++L K +S + S + + +K N S+ +KS N+ ++SG +
Sbjct: 344 DDITKELEKSAKSLEETTDKIGSKIDNTSQAIKSNLEEASLKTEKSVNDAVKSGEKLIGD 403
Query: 1188 AATSMAKKFDEMKEVISANSTPV 1210
A+ K FD ++ + A + +
Sbjct: 404 LASEAKKTFDSAEQKLDAKFSKI 426
>U41510-1|ABP49525.1| 327|Caenorhabditis elegans Hypothetical
protein ZC449.6 protein.
Length = 327
Score = 30.7 bits (66), Expect = 8.9
Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 6/69 (8%)
Query: 133 GECPPHAFCMIAKNLNKGLMGSDVFLCYKKSMNRPPLISYKPDVLF---RYPVTD-RRSL 188
G+ PPH F ++ L + +LCYK + PP+ ++ +VL Y + RR L
Sbjct: 253 GKTPPHHF--VSCLLVSTFVSLSSYLCYKIFNSSPPMTRFELEVLITDNTYSIEKARREL 310
Query: 189 AFPPSVPLF 197
+ P LF
Sbjct: 311 GYCPEQNLF 319
Database: celegans
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 12,573,161
Number of sequences in database: 27,539
Lambda K H
0.319 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 35,750,063
Number of Sequences: 27539
Number of extensions: 1443632
Number of successful extensions: 3560
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 3508
Number of HSP's gapped (non-prelim): 38
length of query: 1604
length of database: 12,573,161
effective HSP length: 91
effective length of query: 1513
effective length of database: 10,067,112
effective search space: 15231540456
effective search space used: 15231540456
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)
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