Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001510-TA|BGIBMGA001510-PA|IPR001412|Aminoacyl-tRNA
synthetase, class I, IPR005113|uDENN, IPR001194|DENN, IPR005112|dDENN,
IPR002885|Pentatricopeptide repeat
(1604 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1 p... 73 2e-12
At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1 p... 73 2e-12
At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein ... 47 9e-05
At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein ... 38 0.055
At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containi... 38 0.055
At5g57210.1 68418.m07147 microtubule-associated protein-related ... 34 0.89
At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containi... 34 0.89
At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11) ... 33 1.2
At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family... 33 1.6
At5g38730.1 68418.m04684 pentatricopeptide (PPR) repeat-containi... 32 2.7
At1g51390.1 68414.m05782 nitrogen fixation NifU-like family prot... 31 4.8
At1g17300.1 68414.m02109 expressed protein 31 4.8
At3g50850.1 68416.m05568 expressed protein 31 6.3
At1g63400.1 68414.m07170 pentatricopeptide (PPR) repeat-containi... 31 6.3
At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containi... 31 6.3
At1g72390.1 68414.m08373 expressed protein 31 8.3
At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containi... 31 8.3
At1g11040.1 68414.m01265 DNAJ chaperone C-terminal domain-contai... 31 8.3
>At1g49040.2 68414.m05499 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 909
Score = 72.9 bits (171), Expect = 2e-12
Identities = 101/482 (20%), Positives = 196/482 (40%), Gaps = 54/482 (11%)
Query: 172 YKPDVLFRYPVTDRRSL-AFPPSVPLFCLPMGATLELWPNNAASPK--PVFSTFVLTVAD 228
Y P +L ++P TD+ A PP +P LP G ++ P P VLT D
Sbjct: 33 YLPALLDQFPPTDQSPYPAPPPQLPTCVLPAGVEFHSSGFVSSDPASFPRSYPIVLTEGD 92
Query: 229 ATEKVYGSAVTF--------YESY--PYSELTETQMELLGWRANVSQNTHSVHVVKSVCL 278
+ K++ S + F E+Y P + + + L+ N +S+ + +C
Sbjct: 93 GS-KIFVSCIAFRDRVCEDIIEAYRLPPNTYADKCICLVSHAPNFRVLRNSLEEIFVLCF 151
Query: 279 LSRWPFSDTFE--RWLLYILLSPSNPSDRVI---------VTRRDDQPLVRSGASFRQXX 327
S ++ +++ + P+ DRV+ V + L ++ S +
Sbjct: 152 SSEGSCKPLWDIIAYMVSNVPLPTPGKDRVLFAVENCLLSVEAPPEDSLPQADISLQPLV 211
Query: 328 XXXXXXXXXXXXXXAITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLA 387
+ E++ILI S + LT VSE++ L++PF+W YIPL
Sbjct: 212 QCLDVDNLIKLFTSVLVERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFSGV 271
Query: 388 EVLHAPLPYLIGVDSRFFDLYEPPPDVTCVDLDTNNITVCESQRNNISIKLLPKRQVKAL 447
+ + AP PY++G+ S V VDLD N IT E I +P+ + L
Sbjct: 272 DYIDAPTPYMMGLHSDVDTSNLAMDGVVVVDLDINQITTSE------EIPQIPEPEFSTL 325
Query: 448 K-QTLETLYGSIRPASPIHHSSRNRYNGEATTSLDRDFQKRKKEQALELKIQEAFLRFMA 506
+ L+ L+ ++ + + G + + K E +L+++ FL+ A
Sbjct: 326 RNDILKLLHPNVVAIDQL------KGFGNSVEQCPKSLSKPWGEDH-DLQLRVIFLKCFA 378
Query: 507 CTLQGYRSYLIPITKAPTVGTTDPDALFQMNEFLRSREK-TQQRFFTLMMRTQMFTRFIE 565
L GYR+++ + +F + FL+ R + T Q ++++ F++
Sbjct: 379 SILGGYRNFI-------------ENKVFSTDAFLKRRSRSTNQPPEPMLVQFLGSFAFLD 425
Query: 566 ESSFVYDADQGLT-FFDECIEKIASGEERLLGMDTTNASERTVFLLPPDPPDPQKTYTYE 624
+D+ T ++ + + G++ + + ++ + + P+ + YTY+
Sbjct: 426 YLERRLSSDEKSTNLLEKLQDAVGRGQDAMSILPKSSMEPEIITIAEPEVEESATRYTYD 485
Query: 625 KF 626
+F
Sbjct: 486 RF 487
>At1g49040.1 68414.m05498 stomatal cytokinesis defective / SCD1
protein (SCD1) contains Pfam PF02141: DENN (AEX-3)
domain; contains Pfam PF00400: WD domain, G-beta repeat
(8 copies); identical to stomatal cytokinesis defective
[Arabidopsis thaliana] GI:19743728; supporting cDNA
gi|19743727|gb|AY082605.1|; PMID 12874123
Length = 1187
Score = 72.9 bits (171), Expect = 2e-12
Identities = 101/482 (20%), Positives = 196/482 (40%), Gaps = 54/482 (11%)
Query: 172 YKPDVLFRYPVTDRRSL-AFPPSVPLFCLPMGATLELWPNNAASPK--PVFSTFVLTVAD 228
Y P +L ++P TD+ A PP +P LP G ++ P P VLT D
Sbjct: 33 YLPALLDQFPPTDQSPYPAPPPQLPTCVLPAGVEFHSSGFVSSDPASFPRSYPIVLTEGD 92
Query: 229 ATEKVYGSAVTF--------YESY--PYSELTETQMELLGWRANVSQNTHSVHVVKSVCL 278
+ K++ S + F E+Y P + + + L+ N +S+ + +C
Sbjct: 93 GS-KIFVSCIAFRDRVCEDIIEAYRLPPNTYADKCICLVSHAPNFRVLRNSLEEIFVLCF 151
Query: 279 LSRWPFSDTFE--RWLLYILLSPSNPSDRVI---------VTRRDDQPLVRSGASFRQXX 327
S ++ +++ + P+ DRV+ V + L ++ S +
Sbjct: 152 SSEGSCKPLWDIIAYMVSNVPLPTPGKDRVLFAVENCLLSVEAPPEDSLPQADISLQPLV 211
Query: 328 XXXXXXXXXXXXXXAITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLA 387
+ E++ILI S + LT VSE++ L++PF+W YIPL
Sbjct: 212 QCLDVDNLIKLFTSVLVERRILIRSNKYSLLTLVSESICHLIYPFRWLQVYIPLLFFSGV 271
Query: 388 EVLHAPLPYLIGVDSRFFDLYEPPPDVTCVDLDTNNITVCESQRNNISIKLLPKRQVKAL 447
+ + AP PY++G+ S V VDLD N IT E I +P+ + L
Sbjct: 272 DYIDAPTPYMMGLHSDVDTSNLAMDGVVVVDLDINQITTSE------EIPQIPEPEFSTL 325
Query: 448 K-QTLETLYGSIRPASPIHHSSRNRYNGEATTSLDRDFQKRKKEQALELKIQEAFLRFMA 506
+ L+ L+ ++ + + G + + K E +L+++ FL+ A
Sbjct: 326 RNDILKLLHPNVVAIDQL------KGFGNSVEQCPKSLSKPWGEDH-DLQLRVIFLKCFA 378
Query: 507 CTLQGYRSYLIPITKAPTVGTTDPDALFQMNEFLRSREK-TQQRFFTLMMRTQMFTRFIE 565
L GYR+++ + +F + FL+ R + T Q ++++ F++
Sbjct: 379 SILGGYRNFI-------------ENKVFSTDAFLKRRSRSTNQPPEPMLVQFLGSFAFLD 425
Query: 566 ESSFVYDADQGLT-FFDECIEKIASGEERLLGMDTTNASERTVFLLPPDPPDPQKTYTYE 624
+D+ T ++ + + G++ + + ++ + + P+ + YTY+
Sbjct: 426 YLERRLSSDEKSTNLLEKLQDAVGRGQDAMSILPKSSMEPEIITIAEPEVEESATRYTYD 485
Query: 625 KF 626
+F
Sbjct: 486 RF 487
>At5g35560.1 68418.m04231 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain; this
cDNA may contain an anomalously spliced intron...will
require further examination.
Length = 765
Score = 47.2 bits (107), Expect = 9e-05
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 342 AITEQKILIHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGVD 401
A+ E++I+ L A ++ ++ PF+WQ +P+ P + E L AP+PY++GV
Sbjct: 559 ALLEKQIVFVCSNLGILAASVLSIIPVIRPFRWQSLLMPVLPDDMLEFLDAPVPYIVGVK 618
Query: 402 SRFFDLYEPPPDVTCVDLDTNNI 424
++ ++ +V VD+ N +
Sbjct: 619 NKTSEVQSKLTNVIVVDILKNQV 641
>At2g20320.1 68415.m02373 DENN (AEX-3) domain-containing protein
contains Pfam domain PF02141: DENN (AEX-3) domain
Length = 976
Score = 37.9 bits (84), Expect = 0.055
Identities = 16/51 (31%), Positives = 31/51 (60%)
Query: 350 IHSLRPDTLTAVSEAVSSLLFPFKWQCPYIPLCPLGLAEVLHAPLPYLIGV 400
I SL L+A+ ++ ++ PF+WQ +P+ P + + L AP+P+L+ +
Sbjct: 814 ILSLETGVLSAIVLSLVPMIRPFQWQSLLLPVLPGRMFDFLEAPVPFLVKI 864
>At1g73710.1 68414.m08535 pentatricopeptide (PPR) repeat-containing
protein low similarity to fertility restorer [Petunia x
hybrida] GI:22128587, post-transcriptional control of
chloroplast gene expression CRP1 [Zea mays] GI:3289002;
contains Pfam profile PF01535: PPR repeat
Length = 991
Score = 37.9 bits (84), Expect = 0.055
Identities = 20/58 (34%), Positives = 25/58 (43%)
Query: 722 LRTAYELLERAAKLKVPCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTY 779
L A L K VP D V + M+ CG H A LL M+ G+ P+ TY
Sbjct: 321 LNDAANLFSEMLKSGVPIDTVTFNTMIHTCGTHGHLSEAESLLKKMEEKGISPDTKTY 378
>At5g57210.1 68418.m07147 microtubule-associated protein-related
contains some similarity to microtubule-associated
protein GI:5032258 from [Arabidopsis thaliana]; contains
Pfam profile PF00566: TBC domain
Length = 737
Score = 33.9 bits (74), Expect = 0.89
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 1000 VSPDSPSDLRILT--RSESFAGDAQIVQNLQRLSFTGISNAKTKCSRALSFPEESDKDVD 1057
V D + RIL+ R AG A + R S NA + + L+FPE+ D
Sbjct: 383 VEADLGCEFRILSSPRGALVAGMAVSMILYLRSSLLATENATSSLKKLLNFPEDIDLSKV 442
Query: 1058 VETLKTSKASPLRVSPRTPVLSDDP 1082
+E KT ++ L ++ R ++ P
Sbjct: 443 IEKAKTLQSLALEINARRDLIPKGP 467
>At1g76280.1 68414.m08858 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 773
Score = 33.9 bits (74), Expect = 0.89
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 3/98 (3%)
Query: 696 LGACYSLYFLTLPSRLMLNRGKEHATLRTAYELLERAAKLKVPCDEVCYRVMMQLCG-IH 754
L A ++Y T ++L+ E + +R P D Y +M+ C IH
Sbjct: 515 LSAHSNMYLGTPTYNIVLHSLLEANETDMVINIFKRMKSCGCPADVATYNIMIDCCSLIH 574
Query: 755 SFPVMAVQLLFLMKRAGLQPNALTYGCYNRWVL-EANW 791
S+ A L+ +M R G P A+T+ + +L +AN+
Sbjct: 575 SYK-SACALVSMMIRDGFSPKAVTFTALMKILLNDANF 611
>At5g54260.1 68418.m06759 DNA repair and meiosis protein (Mre11)
identical to DNA repair and meiosis protein (Mre11)
GI:5524769 from [Arabidopsis thaliana]
Length = 720
Score = 33.5 bits (73), Expect = 1.2
Identities = 42/166 (25%), Positives = 68/166 (40%), Gaps = 13/166 (7%)
Query: 1133 EQLGKLHRSETVPAGTVSSSLVSLGNTLKLNFGPTSMAGKKSNELLQSGLSS--LKSAAT 1190
E GKL + ++ +G L+ S S++ L +GL+S L ++
Sbjct: 471 ETRGKLAKDSDAKKFEEDDLILKVGECLEERLKDRSTRPTGSSQFLSTGLTSENLTKGSS 530
Query: 1191 SMAKKF---DEMKEVISANSTPVKGAIG--TATSALGAFRADDDGVD---ASSEINSDEL 1242
+A DE +S + P +G G TA + G +A G ASS + L
Sbjct: 531 GIANASFSDDEDTTQMSGLAPPTRGRRGSSTANTTRGRAKAPTRGRGRGKASSAMKQTTL 590
Query: 1243 IGGTGFRRASSEAELACSMERGSLATLISHLPDNLYPQTSAPVKPE 1288
GFR++ A A S S +T+ D++ +S V+PE
Sbjct: 591 DSSLGFRQSQRSASAAASAAFKSASTIGE---DDVDSPSSEEVEPE 633
>At3g57370.1 68416.m06386 transcription factor IIB (TFIIB) family
protein contains Pfam profile: PF00382 transcription
factor TFIIB repeat
Length = 360
Score = 33.1 bits (72), Expect = 1.6
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 5/61 (8%)
Query: 1118 KLFHRRSNSFQDDPPEQLGKLHRSETVPAGTVSSSLVSLGNTLKLNFGPTSMAGKKSNEL 1177
KL + SN F LG SET+ A + LG+ K +F P SMA K N+
Sbjct: 104 KLMNGSSNDFLS-----LGTSQNSETITASSDEFLFSDLGHLQKFSFDPLSMASTKPNKA 158
Query: 1178 L 1178
L
Sbjct: 159 L 159
>At5g38730.1 68418.m04684 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 596
Score = 32.3 bits (70), Expect = 2.7
Identities = 18/69 (26%), Positives = 33/69 (47%)
Query: 711 LMLNRGKEHATLRTAYELLERAAKLKVPCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRA 770
++LN + T +++ ++ KL V + Y V++ C P A +LL M+
Sbjct: 173 VLLNSLVKQRLTDTVWKIFKKMVKLGVVANIHVYNVLVHACSKSGDPEKAEKLLSEMEEK 232
Query: 771 GLQPNALTY 779
G+ P+ TY
Sbjct: 233 GVFPDIFTY 241
>At1g51390.1 68414.m05782 nitrogen fixation NifU-like family protein
simikar to HIRA-interacting protein 5 (NIFU FAMILY)
(SP:Q9QZ23) {Mus musculus}; contains Pfam profile:
PF01106 NifU-like domain
Length = 275
Score = 31.5 bits (68), Expect = 4.8
Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 990 TVSDKRQTIHVSPDSPSDLRILTRSESFAGDAQIVQNLQRLSFTGISNAKTKCSRALSFP 1049
++S ++ SP S S L I RS + N S T +NA CSR+ SFP
Sbjct: 10 SLSRHTASVTCSPSS-SSLLISRRSLFISAATHFPVNFSE-SIT--TNASRNCSRSSSFP 65
Query: 1050 ---EESDKDVDVETLKTSKASPLRVSPRTPVL 1078
E + + ++T T S L SP PV+
Sbjct: 66 FNWIEQRRTMFIQTQSTPNPSSLMFSPGKPVM 97
>At1g17300.1 68414.m02109 expressed protein
Length = 116
Score = 31.5 bits (68), Expect = 4.8
Identities = 21/77 (27%), Positives = 35/77 (45%)
Query: 1011 LTRSESFAGDAQIVQNLQRLSFTGISNAKTKCSRALSFPEESDKDVDVETLKTSKASPLR 1070
+T S A D + + +++ G ++ + R S P + DKD + +++ K S R
Sbjct: 1 MTHSSQAARDLHVSKEMKKEPLKGEKDSLRRIPRGGSNPIQIDKDQEKASVRGEKDSFRR 60
Query: 1071 VSPRTPVLSDDPLGALS 1087
V TP S L A S
Sbjct: 61 VPTPTPASSSRHLSASS 77
>At3g50850.1 68416.m05568 expressed protein
Length = 251
Score = 31.1 bits (67), Expect = 6.3
Identities = 23/70 (32%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
Query: 1229 DGVDASSEINSDELIGGTGFRRASSEAELACSMERGSLATLISHLPDNLYPQTSAPVKPE 1288
DG D+SS IN EL GTG ++ A L ++ L +I +L N K
Sbjct: 82 DGSDSSSPINIVELGSGTGIVGIAAAATLGANVTVTDLPNVIENLKFNADANAQVVAK-- 139
Query: 1289 SVGVSVHMSS 1298
G VH++S
Sbjct: 140 -FGGKVHVAS 148
>At1g63400.1 68414.m07170 pentatricopeptide (PPR) repeat-containing
protein contains multiple PPR-repeats Pfam profile:
PF01535
Length = 577
Score = 31.1 bits (67), Expect = 6.3
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 686 RSPEAWAKCLLGACYSL-YFLTLPSRLMLNRGKEHAT-LRTAYELLERAAKLKVPCDEVC 743
RS + A LLG L Y ++ + L G H + A L+++ ++ D +
Sbjct: 133 RSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 192
Query: 744 YRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTYG 780
+ ++ +H+ AV L+ M + G QPN +TYG
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
>At1g62590.1 68414.m07061 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 634
Score = 31.1 bits (67), Expect = 6.3
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 2/97 (2%)
Query: 686 RSPEAWAKCLLGACYSL-YFLTLPSRLMLNRGKEHAT-LRTAYELLERAAKLKVPCDEVC 743
RS + A LLG L Y ++ + L G H + A L+++ ++ D +
Sbjct: 133 RSQISLALALLGKMMKLGYEPSIVTLSSLLNGYCHGKRISDAVALVDQMVEMGYRPDTIT 192
Query: 744 YRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTYG 780
+ ++ +H+ AV L+ M + G QPN +TYG
Sbjct: 193 FTTLIHGLFLHNKASEAVALVDRMVQRGCQPNLVTYG 229
>At1g72390.1 68414.m08373 expressed protein
Length = 1088
Score = 30.7 bits (66), Expect = 8.3
Identities = 32/120 (26%), Positives = 51/120 (42%), Gaps = 12/120 (10%)
Query: 1163 NFGPTSMAGKKSNELLQSGLSSLKSAATSMAKKFDEMKEVISANSTPVKGAIGTATSALG 1222
N G +AG +S L + SSL + + S +T +G+ + S
Sbjct: 48 NLGTNMLAGLRSQPLQDAPNSSLALVPPQQQRYMG----IGSTRNTQDQGSNSVSVSG-- 101
Query: 1223 AFRADDDGVDASSEINSDELIGGTGF--RRASSEAELACSMERGSLATLISHLPDNLYPQ 1280
A G+DA SD + GT F +R S E +++ SM + T +SH+ + PQ
Sbjct: 102 ---ASPGGLDAMLPYGSDSMNPGTSFHRKRESQEGQMS-SMPGLNKRTRVSHMGPDGVPQ 157
>At1g13800.1 68414.m01620 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 883
Score = 30.7 bits (66), Expect = 8.3
Identities = 15/55 (27%), Positives = 24/55 (43%)
Query: 725 AYELLERAAKLKVPCDEVCYRVMMQLCGIHSFPVMAVQLLFLMKRAGLQPNALTY 779
AY+L + + + D VCY V G A++L M G+ P+ + Y
Sbjct: 380 AYDLFKEFRETNISLDRVCYNVAFDALGKLGKVEEAIELFREMTGKGIAPDVINY 434
>At1g11040.1 68414.m01265 DNAJ chaperone C-terminal
domain-containing protein contains Pfam profile PF01556:
DnaJ C terminal region
Length = 438
Score = 30.7 bits (66), Expect = 8.3
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 432 NNISIKLLPKRQVKALKQTLETLYGSIRP-ASPIHHSSRNRYNGEATTSLDRDFQKRKKE 490
NN S P + QTL L+GS++ +SP +S N + +S+ + KR K+
Sbjct: 146 NNTSPMTSPFTSPRGKDQTLGDLFGSVKKLSSPTSNSPINGVKQSSPSSISKSASKRDKD 205
Query: 491 Q 491
+
Sbjct: 206 E 206
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.319 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 34,259,436
Number of Sequences: 28952
Number of extensions: 1383809
Number of successful extensions: 3735
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 3701
Number of HSP's gapped (non-prelim): 35
length of query: 1604
length of database: 12,070,560
effective HSP length: 91
effective length of query: 1513
effective length of database: 9,435,928
effective search space: 14276559064
effective search space used: 14276559064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)
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