GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001509-TA|BGIBMGA001509-PA|IPR001680|WD-40 repeat,
IPR011046|WD40-like
         (527 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              25   1.2  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    25   1.2  
AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex det...    24   2.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    23   8.2  

>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 13/35 (37%), Positives = 17/35 (48%)

Query: 440 RTIVDATNVFIDIFEGKINMFSPENLYLYKCLFKR 474
           + I  A  +  DI EGKINM     L   +C  K+
Sbjct: 35  KEIGTAQQIIDDINEGKINMDDENVLLFIECTMKK 69


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 25.4 bits (53), Expect = 1.2
 Identities = 11/39 (28%), Positives = 22/39 (56%)

Query: 84  VEAAYGGCFRADGRLLVAGIEEAAVKLFDVQSKNVLRVF 122
           ++ A   C +   R +++G+  AA  +  +Q  N+LR+F
Sbjct: 196 IDGAEDHCNKTAVRKVISGVVGAASSVTSIQVANLLRLF 234


>AY569700-1|AAS86653.1|  407|Apis mellifera complementary sex
           determiner protein.
          Length = 407

 Score = 24.2 bits (50), Expect = 2.7
 Identities = 32/124 (25%), Positives = 51/124 (41%), Gaps = 11/124 (8%)

Query: 246 SNISQHHKTVTTLRL--ASNNSRLMSASLDRHVKIYDVSTFKVVHNIDFPNAILSMAISE 303
           SN S   KTV       +S++  L        +   ++   K+  + D P    +  +  
Sbjct: 91  SNTSNTSKTVILSNKLESSDDISLFRGPEGIQINATELQKIKLEIHRDLPGKSTTTTVEV 150

Query: 304 HDDILTVGMMDGIISIRKREE---PVRQSEKRKNLLKFIPDHTSQTKADTVEVANEVKIN 360
             DI+     + +I IR+  E   P+ + E+ KN+L  I     Q   DTV V N  K  
Sbjct: 151 KRDIINP---EDVIVIRRTGEGSKPLFEREEIKNVLTKINKIEEQ---DTVLVVNIEKSG 204

Query: 361 KKQK 364
           K+ K
Sbjct: 205 KESK 208


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 22.6 bits (46), Expect = 8.2
 Identities = 10/21 (47%), Positives = 13/21 (61%)

Query: 102 GIEEAAVKLFDVQSKNVLRVF 122
           GIE A +KL   Q +N+L  F
Sbjct: 431 GIEIADIKLTTNQQRNILNTF 451


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.136    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,376
Number of Sequences: 429
Number of extensions: 5626
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 8
Number of HSP's gapped (non-prelim): 4
length of query: 527
length of database: 140,377
effective HSP length: 61
effective length of query: 466
effective length of database: 114,208
effective search space: 53220928
effective search space used: 53220928
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 46 (22.6 bits)