Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001508-TA|BGIBMGA001508-PA|IPR000734|Lipase,
IPR013818|Lipase, N-terminal
         (329 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5 |Sc...    34   0.024
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    30   0.39 
SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomy...    28   2.1  
SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyce...    28   2.1  
SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    27   4.9  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    27   4.9  
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch...    26   6.4  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    26   6.4  
SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFII...    26   8.5  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   8.5  

>SPAC2F7.08c |snf5||chromatin remodeling complex subunit Snf5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 34.3 bits (75), Expect = 0.024
 Identities = 16/67 (23%), Positives = 30/67 (44%)

Query: 37  MPDGDGNLHTVDLEATPDYELLDEINRNPANNQYLLFTRRNRRSSQTLTINNANSVTRSN 96
           +P  D  +H + L    D E L+EIN N    ++L+   +       + +  + ++T +N
Sbjct: 415 VPSDDDFMHALSLSTNSDGETLNEINTNNPEREHLIVRLKVDSQKLKIIVEQSQTLTLNN 474

Query: 97  FNANNPT 103
           F     T
Sbjct: 475 FQQRKLT 481


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 30.3 bits (65), Expect = 0.39
 Identities = 27/98 (27%), Positives = 49/98 (50%), Gaps = 22/98 (22%)

Query: 61  INRNPANNQYLLFTRRNR-----RSSQTLTINNANSVTRSNFNA----------NNPTVV 105
           IN+ P +N  +L   R+R     R S ++   +A+S+T S+F+           N+PT+V
Sbjct: 404 INQRPPSNLRILAPSRSRATIHERPSSSILHRHAHSLTSSSFSTKTLATTKEIQNSPTLV 463

Query: 106 ----IAH---GWLSNQNTDINPTIRDAYLGKSDVNVIV 136
               + H    +L NQ ++IN T   ++    D+N ++
Sbjct: 464 ESSTVVHHDPSYLQNQTSEINDTNHSSHSSPLDLNRMI 501


>SPAC26A3.17c ||SPAC8E11.11|N-methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 357

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 20/54 (37%), Positives = 25/54 (46%), Gaps = 5/54 (9%)

Query: 120 PTIRDAYLGKSDVNVIVLDWRRLALSDYA-----TAARGVPAVGRGLGQFLTFL 168
           PT   + L  SD N +++ W R  +   A     T  R V  VG GLG   TFL
Sbjct: 150 PTEDSSSLLDSDANAVMMSWERKIMHRSAEIIAPTKGRRVLNVGFGLGIIDTFL 203


>SPAC4A8.05c |myp2|myo3|myosin II heavy chain |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2104

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/29 (34%), Positives = 18/29 (62%)

Query: 300 GNDDLRKSGQIRTLQSEHRPEISLLSYRI 328
           G D++ K G  RT+   HR ++S L +++
Sbjct: 625 GRDNIEKKGIFRTVSQRHRRQLSSLMHQL 653


>SPBC902.04 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 589

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 2/56 (3%)

Query: 273 RNHLVGNQCSNMLQVSSNSCRGNRL--NMGNDDLRKSGQIRTLQSEHRPEISLLSY 326
           R H  GN+  N  +       G+R   N GND    + ++R +  EH  E ++ S+
Sbjct: 207 RRHSPGNRRFNPYKAYPQPHLGHRFSRNAGNDPTSTALEVRNIPEEHFNEENIRSF 262


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 20/76 (26%), Positives = 32/76 (42%), Gaps = 4/76 (5%)

Query: 177 NTMHLVGFSLGAHLVGNAGRLDPAGPLWNTNSNRLNARDGVYVEAIHTDGSTTGLGIGSA 236
           N   L+G  +GA L+ +AG L        +    L A   ++  A+ T G+T   GI   
Sbjct: 298 NLAELIGEMVGARLISHAGSLTNLSKCPASTVQILGAEKALF-RALKTRGNTPKYGI--- 353

Query: 237 VANADFFPNGGNSQPG 252
           + ++ F    G    G
Sbjct: 354 IYHSSFIGKAGAKNKG 369


>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 456

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 9/25 (36%), Positives = 15/25 (60%)

Query: 297 LNMGNDDLRKSGQIRTLQSEHRPEI 321
           +N GNDD+     + T+  EHR ++
Sbjct: 91  INWGNDDVHSLTNLETIAREHRYQV 115


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 11/53 (20%), Positives = 27/53 (50%)

Query: 102 PTVVIAHGWLSNQNTDINPTIRDAYLGKSDVNVIVLDWRRLALSDYATAARGV 154
           P++ I H  + N+ + I  + +   +G  D  +++L+ R   + D+    +G+
Sbjct: 31  PSIKILHDSVGNKISCIGKSTKRIAIGTLDGRIVILNSRLQLIRDFYACEQGI 83


>SPAC2G11.14 |taf111|taf1, taf1, taf130|transcription factor TFIID
           complex subunit Taf111|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 204 WNTNSNRLNARDGVYVEAIHTDGSTTGLGIG 234
           W T  N +NA  G  +  +  +G  TG+G G
Sbjct: 720 WITTRNFINATQGKAMLTLFGEGDPTGIGEG 750


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 17  AAVPVQEDSFRKGNYPRYIEMPDGDGNLHTVDL--------EATPDYELLDEINRNPANN 68
           A +P        G YP  + +P G  N H               P   +  +    P NN
Sbjct: 136 AGIPAAMPGMPSG-YPGTVPIPQGGYNAHYSSPYNNGYPIGAVNPTSAIPAQPPAQPVNN 194

Query: 69  QYLLFTRRNRRSSQTLTINNA-NSVTRSNFNANNP 102
               + R N RSS   T  +A  S  RS  ++ NP
Sbjct: 195 VLPSYVRSNSRSSARSTARSAPRSTQRSRSSSANP 229


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.133    0.403 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,594,708
Number of Sequences: 5004
Number of extensions: 69238
Number of successful extensions: 131
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 126
Number of HSP's gapped (non-prelim): 10
length of query: 329
length of database: 2,362,478
effective HSP length: 73
effective length of query: 256
effective length of database: 1,997,186
effective search space: 511279616
effective search space used: 511279616
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 54 (25.8 bits)